Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC074117.2-201ENST00000417130 397 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC138623.1-201ENST00000418060 216 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 EIF4EP4-201ENST00000424916 578 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC002486.1-201ENST00000435098 391 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AL513124.1-201ENST00000450410 614 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 DYNLL1P5-201ENST00000467158 270 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC093534.1-201ENST00000504977 132 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC108078.1-201ENST00000508073 725 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC091133.4-201ENST00000511142 308 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 RN7SKP219-201ENST00000516825 296 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 SNORA31.23-201ENST00000517219 133 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AP000889.2-201ENST00000532684 490 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 PSMA3P-201ENST00000555485 635 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AL133241.1-201ENST00000556832 487 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC027176.1-201ENST00000560204 514 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 MTCYBP33-201ENST00000575007 1130 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC007684.1-201ENST00000609671 477 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 MIR5739-201ENST00000619803 80 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
DDX28Q9NUL7 Y_RNA.324-201ENST00000365165 102 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 RNU1-51P-201ENST00000365345 176 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 RNU6-622P-201ENST00000384272 103 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 RNU6-434P-201ENST00000384376 107 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 RNA5SP390-201ENST00000410191 113 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 OR9R1P-201ENST00000412200 877 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.22□□□□□ -2.05
DDX28Q9NUL7 MTCO2P19-201ENST00000427513 598 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 HMGB1P31-201ENST00000437242 427 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.22□□□□□ -2.05
DDX28Q9NUL7 TPT1P7-201ENST00000458300 517 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AP001025.1-201ENST00000486139 332 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 RPS27P21-201ENST00000486977 252 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.22□□□□□ -2.05
DDX28Q9NUL7 MTCO3P7-201ENST00000510008 774 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AF213884.2-201ENST00000510417 903 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AC008413.1-201ENST00000511864 177 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AP005902.1-201ENST00000521358 186 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AP005435.4-201ENST00000529514 284 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AC007336.1-201ENST00000576365 3828 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AC008752.3-201ENST00000588113 712 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AL391646.1-201ENST00000603860 190 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AC009233.1-201ENST00000616477 371 ntBASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.22□□□□□ -2.05
DDX28Q9NUL7 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.22□□□□□ -2.05
DDX28Q9NUL7 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.22□□□□□ -2.05
DDX28Q9NUL7 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.22□□□□□ -2.05
DDX28Q9NUL7 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
DDX28Q9NUL7 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.21□□□□□ -2.05
DDX28Q9NUL7 ZNF720P1-201ENST00000562403 1939 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 RNA5SP456-201ENST00000364002 114 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 RNU6-517P-201ENST00000384362 110 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 RNU6-1127P-201ENST00000384580 107 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 SNORD70.1-201ENST00000391007 85 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 RNU6-903P-201ENST00000391270 109 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 RNU2-63P-201ENST00000410792 194 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 SNRPFP3-201ENST00000457792 225 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 SCARNA18-201ENST00000459004 134 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AC090515.1-201ENST00000465295 476 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 MTCO3P9-201ENST00000506989 781 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AC079140.5-201ENST00000507882 310 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 RNU4-29P-201ENST00000515943 174 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 RNU6-405P-201ENST00000516637 110 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AC091544.4-201ENST00000555268 342 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AC105137.2-201ENST00000569073 466 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AC078795.2-201ENST00000602835 1252 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AL138963.2-201ENST00000605137 226 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AP001596.2-201ENST00000608410 312 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AC093788.1-201ENST00000609356 927 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 MIR6817-201ENST00000615588 66 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 AL590808.1-201ENST00000618696 141 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms