Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.94□□□□□ -1.94
NPAS1Q99742 POLR3GP2-201ENST00000588366 668 ntBASIC2.94□□□□□ -1.94
NPAS1Q99742 AL117336.2-201ENST00000602435 335 ntBASIC2.94□□□□□ -1.94
NPAS1Q99742 AC019159.1-201ENST00000605094 187 ntBASIC2.94□□□□□ -1.94
NPAS1Q99742 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.94□□□□□ -1.94
NPAS1Q99742 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
NPAS1Q99742 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
NPAS1Q99742 AC103988.1-201ENST00000566382 2177 ntBASIC2.94□□□□□ -1.94
NPAS1Q99742 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
NPAS1Q99742 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
NPAS1Q99742 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.93□□□□□ -1.94
NPAS1Q99742 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.93□□□□□ -1.94
NPAS1Q99742 AC008669.1-201ENST00000565823 2178 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
NPAS1Q99742 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
NPAS1Q99742 Y_RNA.61-201ENST00000362835 102 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 RNU6-105P-201ENST00000363909 104 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 RNA5SP387-201ENST00000364226 106 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 RNA5SP72-201ENST00000364442 117 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 Y_RNA.339-201ENST00000365325 102 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 Y_RNA.482-201ENST00000384377 111 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 RNU6-1297P-201ENST00000384415 104 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
NPAS1Q99742 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
NPAS1Q99742 AL513475.1-201ENST00000406602 315 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 RNA5SP344-201ENST00000411081 104 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 AL358075.3-201ENST00000426289 226 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 MTND3P9-201ENST00000429526 346 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.93□□□□□ -1.94
NPAS1Q99742 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
NPAS1Q99742 AC009296.1-201ENST00000443146 155 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.93□□□□□ -1.94
NPAS1Q99742 AC133134.1-201ENST00000466800 359 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 AC008571.1-201ENST00000467232 300 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 RN7SL504P-201ENST00000494496 287 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 MTCYBP40-201ENST00000509390 1135 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 AC116337.1-201ENST00000509680 687 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.93□□□□□ -1.94
NPAS1Q99742 ACA59.1-201ENST00000515966 143 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 AC007536.1-201ENST00000533382 349 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.93□□□□□ -1.94
NPAS1Q99742 FRG2DP-202ENST00000566967 323 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.93□□□□□ -1.94
NPAS1Q99742 C8orf59P2-201ENST00000603441 271 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 AC018889.1-201ENST00000605372 397 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 MIR3976-201ENST00000606807 139 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 AL359757.2-201ENST00000624309 274 ntBASIC2.93□□□□□ -1.94
NPAS1Q99742 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
NPAS1Q99742 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
NPAS1Q99742 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.93□□□□□ -1.94
NPAS1Q99742 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.93□□□□□ -1.94
NPAS1Q99742 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
NPAS1Q99742 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.92□□□□□ -1.94
NPAS1Q99742 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.92□□□□□ -1.94
NPAS1Q99742 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
NPAS1Q99742 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.92□□□□□ -1.94
NPAS1Q99742 AC073544.1-201ENST00000600110 1595 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 RBBP8P1-201ENST00000449447 1844 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 Y_RNA.259-201ENST00000364619 101 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 RNU1-140P-201ENST00000365040 165 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
NPAS1Q99742 RNU6-748P-201ENST00000384648 107 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 RNU6-370P-201ENST00000411008 104 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.92□□□□□ -1.94
NPAS1Q99742 AC245054.2-201ENST00000415639 319 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.92□□□□□ -1.94
NPAS1Q99742 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.92□□□□□ -1.94
NPAS1Q99742 AC013470.1-201ENST00000453438 462 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 RN7SL601P-201ENST00000471221 293 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 RNU6-277P-201ENST00000516272 106 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 RNU6-612P-201ENST00000516909 102 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 SNORA31.18-201ENST00000517043 134 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 AC105137.2-201ENST00000569073 466 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.92□□□□□ -1.94
NPAS1Q99742 MIR4273-201ENST00000582824 84 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 MIR5690-201ENST00000583739 73 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.92□□□□□ -1.94
NPAS1Q99742 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.92□□□□□ -1.94
NPAS1Q99742 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.92□□□□□ -1.94
NPAS1Q99742 AL591516.1-201ENST00000611326 274 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 AC096577.2-201ENST00000611455 153 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.92□□□□□ -1.94
NPAS1Q99742 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 AC093831.2-201ENST00000624393 3427 ntBASIC2.92□□□□□ -1.94
NPAS1Q99742 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
NPAS1Q99742 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
NPAS1Q99742 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.91□□□□□ -1.94
NPAS1Q99742 SNORA51.4-201ENST00000364993 124 ntBASIC2.91□□□□□ -1.94
NPAS1Q99742 U8.9-201ENST00000365667 134 ntBASIC2.91□□□□□ -1.94
NPAS1Q99742 Y_RNA.474-201ENST00000384341 102 ntBASIC2.91□□□□□ -1.94
NPAS1Q99742 RNU6-843P-201ENST00000384454 104 ntBASIC2.91□□□□□ -1.94
NPAS1Q99742 MIR544A-201ENST00000384855 91 ntBASIC2.91□□□□□ -1.94
NPAS1Q99742 BTF3L4P2-201ENST00000392798 346 ntBASIC2.91□□□□□ -1.94
NPAS1Q99742 MTCO2P27-201ENST00000420740 428 ntBASIC2.91□□□□□ -1.94
NPAS1Q99742 AL139281.1-201ENST00000422120 335 ntBASIC2.91□□□□□ -1.94
NPAS1Q99742 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.91□□□□□ -1.94
NPAS1Q99742 CST9LP2-201ENST00000437612 320 ntBASIC2.91□□□□□ -1.94
NPAS1Q99742 OSTCP8-201ENST00000445117 448 ntBASIC2.91□□□□□ -1.94
NPAS1Q99742 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms