Protein–RNA interactions for Protein: Q96M89

CCDC138, Coiled-coil domain-containing protein 138, humanhuman

Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC138Q96M89 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC138Q96M89 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC138Q96M89 RNU6-486P-201ENST00000363116 107 ntBASIC3.17□□□□□ -1.9
CCDC138Q96M89 RPL32P35-201ENST00000415214 394 ntBASIC3.17□□□□□ -1.9
CCDC138Q96M89 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC138Q96M89 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC138Q96M89 RNU6-329P-201ENST00000459618 107 ntBASIC3.17□□□□□ -1.9
CCDC138Q96M89 AC112771.1-201ENST00000463581 102 ntBASIC3.17□□□□□ -1.9
CCDC138Q96M89 AC110794.1-201ENST00000505816 425 ntBASIC3.17□□□□□ -1.9
CCDC138Q96M89 AC096745.1-201ENST00000509945 370 ntBASIC3.17□□□□□ -1.9
CCDC138Q96M89 SNORA74D-201ENST00000516404 141 ntBASIC3.17□□□□□ -1.9
CCDC138Q96M89 SNORA20.3-201ENST00000516880 132 ntBASIC3.17□□□□□ -1.9
CCDC138Q96M89 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC138Q96M89 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC138Q96M89 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC138Q96M89 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.17□□□□□ -1.9
CCDC138Q96M89 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC138Q96M89 AC103810.1-201ENST00000579873 453 ntBASIC3.17□□□□□ -1.9
CCDC138Q96M89 AC023043.2-201ENST00000589678 1026 ntBASIC3.17□□□□□ -1.9
CCDC138Q96M89 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC138Q96M89 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC138Q96M89 SRGNP1-201ENST00000603392 451 ntBASIC3.17□□□□□ -1.9
CCDC138Q96M89 AL022345.1-201ENST00000607292 135 ntBASIC3.17□□□□□ -1.9
CCDC138Q96M89 MIR7157-201ENST00000635801 60 ntBASIC3.17□□□□□ -1.9
CCDC138Q96M89 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC138Q96M89 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC138Q96M89 Z75746.1-201ENST00000440243 2080 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 MTND5P19-201ENST00000424872 1794 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 RNU6-562P-201ENST00000362731 107 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 RNU6-1010P-201ENST00000362757 107 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 Y_RNA.135-201ENST00000363439 95 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 Y_RNA.212-201ENST00000364177 102 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 RNA5SP267-201ENST00000364893 126 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 RNA5SP229-201ENST00000410809 99 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC138Q96M89 MTND3P8-201ENST00000412909 339 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 AL645568.3-201ENST00000433683 316 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 RPL21P2-201ENST00000440049 481 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 AC115115.1-201ENST00000449927 248 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC138Q96M89 AC018437.1-201ENST00000492214 406 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 RNA5SP217-201ENST00000515959 91 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 AC109329.1-201ENST00000518744 317 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CCDC138Q96M89 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC138Q96M89 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC138Q96M89 AC009314.1-201ENST00000603871 304 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 AC007792.1-201ENST00000623023 402 ntBASIC3.16□□□□□ -1.9
CCDC138Q96M89 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC138Q96M89 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC138Q96M89 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
CCDC138Q96M89 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
CCDC138Q96M89 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
CCDC138Q96M89 Y_RNA.88-201ENST00000363029 99 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 Y_RNA.301-201ENST00000364990 103 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 U8.9-201ENST00000365667 134 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 SNORD116-11-201ENST00000383882 92 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 MIR627-201ENST00000384979 97 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 NUP35P1-201ENST00000422734 947 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 AC005326.1-201ENST00000429197 123 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 AC243964.1-201ENST00000441814 261 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 Z75741.1-201ENST00000446793 314 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 PMCHL2-203ENST00000457791 237 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 RPL23AP70-201ENST00000483361 460 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 RNU6-273P-201ENST00000516937 96 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 SNORA31.18-201ENST00000517043 134 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 SCARNA3-201ENST00000517097 143 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC138Q96M89 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC138Q96M89 AC243972.3-201ENST00000539655 198 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.15□□□□□ -1.91
CCDC138Q96M89 MIR4742-201ENST00000581069 85 ntBASIC3.15□□□□□ -1.91
CCDC138Q96M89 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC138Q96M89 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC138Q96M89 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC138Q96M89 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC138Q96M89 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC138Q96M89 AC002543.1-201ENST00000299783 1954 ntBASIC3.14□□□□□ -1.91
CCDC138Q96M89 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC138Q96M89 AL353743.1-202ENST00000431724 1695 ntBASIC3.14□□□□□ -1.91
CCDC138Q96M89 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC138Q96M89 RNU6-845P-201ENST00000362578 103 ntBASIC3.14□□□□□ -1.91
CCDC138Q96M89 RNU6-461P-201ENST00000364195 107 ntBASIC3.14□□□□□ -1.91
CCDC138Q96M89 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC138Q96M89 MIR544A-201ENST00000384855 91 ntBASIC3.14□□□□□ -1.91
CCDC138Q96M89 RN7SKP32-201ENST00000410167 303 ntBASIC3.14□□□□□ -1.91
CCDC138Q96M89 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.14□□□□□ -1.91
CCDC138Q96M89 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC138Q96M89 BX276092.3-201ENST00000424182 230 ntBASIC3.14□□□□□ -1.91
CCDC138Q96M89 SNAP23P1-201ENST00000433229 246 ntBASIC3.14□□□□□ -1.91
CCDC138Q96M89 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC138Q96M89 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.14□□□□□ -1.91
CCDC138Q96M89 BX510359.1-201ENST00000456973 237 ntBASIC3.14□□□□□ -1.91
CCDC138Q96M89 AMD1P1-201ENST00000457220 922 ntBASIC3.14□□□□□ -1.91
CCDC138Q96M89 PPP1R2P5-201ENST00000457256 603 ntBASIC3.14□□□□□ -1.91
CCDC138Q96M89 AC008526.1-201ENST00000509149 338 ntBASIC3.14□□□□□ -1.91
CCDC138Q96M89 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC138Q96M89 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC138Q96M89 TRAV32-201ENST00000553993 340 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms