Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC093578.1-201ENST00000415219 368 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 AC007098.1-201ENST00000420122 367 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA4Q00056 AC243964.1-201ENST00000441814 261 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 AL031659.1-201ENST00000447075 539 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
HOXA4Q00056 AC034236.1-201ENST00000469891 373 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA4Q00056 RPL30P10-201ENST00000488148 337 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 RPL23AP49-201ENST00000492925 468 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA4Q00056 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA4Q00056 RNU6-581P-201ENST00000516214 105 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 Y_RNA.715-201ENST00000517082 110 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.01□□□□□ -1.93
HOXA4Q00056 AL590705.4-201ENST00000532209 134 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 MRPS36P4-201ENST00000534436 298 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXA4Q00056 HIGD1AP1-201ENST00000550979 275 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA4Q00056 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXA4Q00056 VN1R91P-201ENST00000594377 169 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 VN1R107P-201ENST00000601784 209 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 U2.1-201ENST00000618978 145 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXA4Q00056 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3□□□□□ -1.93
HOXA4Q00056 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3□□□□□ -1.93
HOXA4Q00056 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
HOXA4Q00056 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3□□□□□ -1.93
HOXA4Q00056 SNORA71.3-201ENST00000362582 128 ntBASIC3□□□□□ -1.93
HOXA4Q00056 SNORD116-20-201ENST00000384529 92 ntBASIC3□□□□□ -1.93
HOXA4Q00056 SNORA69.1-201ENST00000390904 137 ntBASIC3□□□□□ -1.93
HOXA4Q00056 SNORA12.2-201ENST00000391040 156 ntBASIC3□□□□□ -1.93
HOXA4Q00056 BTF3L4P2-201ENST00000392798 346 ntBASIC3□□□□□ -1.93
HOXA4Q00056 PTMAP2-201ENST00000397627 327 ntBASIC3□□□□□ -1.93
HOXA4Q00056 FTH1P15-201ENST00000406984 280 ntBASIC3□□□□□ -1.93
HOXA4Q00056 AP000275.1-201ENST00000411943 390 ntBASIC3□□□□□ -1.93
HOXA4Q00056 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3□□□□□ -1.93
HOXA4Q00056 HMGN2P31-201ENST00000432430 273 ntBASIC3□□□□□ -1.93
HOXA4Q00056 AL591043.1-201ENST00000432461 424 ntBASIC3□□□□□ -1.93
HOXA4Q00056 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3□□□□□ -1.93
HOXA4Q00056 CYCSP32-201ENST00000440548 321 ntBASIC3□□□□□ -1.93
HOXA4Q00056 AL731563.1-201ENST00000442202 214 ntBASIC3□□□□□ -1.93
HOXA4Q00056 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3□□□□□ -1.93
HOXA4Q00056 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3□□□□□ -1.93
HOXA4Q00056 MTCO3P8-201ENST00000453691 755 ntBASIC3□□□□□ -1.93
HOXA4Q00056 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3□□□□□ -1.93
HOXA4Q00056 AC110588.1-201ENST00000559699 137 ntBASIC3□□□□□ -1.93
HOXA4Q00056 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3□□□□□ -1.93
HOXA4Q00056 AC060766.3-201ENST00000591442 263 ntBASIC3□□□□□ -1.93
HOXA4Q00056 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3□□□□□ -1.93
HOXA4Q00056 AC025946.2-201ENST00000603398 234 ntBASIC3□□□□□ -1.93
HOXA4Q00056 AC024220.1-201ENST00000603675 484 ntBASIC3□□□□□ -1.93
HOXA4Q00056 AC090425.1-201ENST00000610007 140 ntBASIC3□□□□□ -1.93
HOXA4Q00056 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3□□□□□ -1.93
HOXA4Q00056 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3□□□□□ -1.93
HOXA4Q00056 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
HOXA4Q00056 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXA4Q00056 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3□□□□□ -1.93
HOXA4Q00056 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3□□□□□ -1.93
HOXA4Q00056 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXA4Q00056 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3□□□□□ -1.93
HOXA4Q00056 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3□□□□□ -1.93
HOXA4Q00056 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXA4Q00056 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXA4Q00056 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 SNORD56.1-201ENST00000362913 68 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 Y_RNA.214-201ENST00000364201 112 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 Y_RNA.222-201ENST00000364264 102 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 RNU6-702P-201ENST00000364982 107 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 RPS4XP3-201ENST00000398541 413 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 Y_RNA.592-201ENST00000410274 109 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 RNA5SP44-201ENST00000410446 133 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 RN7SKP53-201ENST00000411337 315 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 BPY2DP-201ENST00000422208 265 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXA4Q00056 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXA4Q00056 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXA4Q00056 Z82188.1-201ENST00000436709 154 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 DYNLT3P2-201ENST00000442517 295 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 AC006026.2-201ENST00000457376 180 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 RPL26P9-201ENST00000457466 433 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 snoU13.28-201ENST00000459235 104 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXA4Q00056 AC093852.1-201ENST00000503587 266 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 AC091874.1-201ENST00000511402 339 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 AC026403.1-201ENST00000518938 295 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.99□□□□□ -1.93
HOXA4Q00056 AC011602.1-201ENST00000546484 331 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 AL391261.3-201ENST00000557194 520 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 MIR3609-201ENST00000582661 80 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 AL138825.1-201ENST00000618587 192 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 AC009093.8-201ENST00000641769 292 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
HOXA4Q00056 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC2.99□□□□□ -1.93
HOXA4Q00056 AC009541.1-201ENST00000438279 2662 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 AC008725.1-201ENST00000605123 2263 ntBASIC2.99□□□□□ -1.93
HOXA4Q00056 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXA4Q00056 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms