Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.58□□□□□ -2
HOXA1P49639 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.58□□□□□ -2
HOXA1P49639 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.58□□□□□ -2
HOXA1P49639 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.58□□□□□ -2
HOXA1P49639 AC100830.2-201ENST00000581636 240 ntBASIC2.58□□□□□ -2
HOXA1P49639 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.58□□□□□ -2
HOXA1P49639 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.58□□□□□ -2
HOXA1P49639 AL160281.1-201ENST00000605307 311 ntBASIC2.58□□□□□ -2
HOXA1P49639 MIR3976-201ENST00000606807 139 ntBASIC2.58□□□□□ -2
HOXA1P49639 CR392039.5-201ENST00000623201 510 ntBASIC2.58□□□□□ -2
HOXA1P49639 AC009093.8-201ENST00000641769 292 ntBASIC2.58□□□□□ -2
HOXA1P49639 ADAM3A-203ENST00000461344 2157 ntBASIC2.58□□□□□ -2
HOXA1P49639 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HOXA1P49639 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
HOXA1P49639 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.57□□□□□ -2
HOXA1P49639 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.57□□□□□ -2
HOXA1P49639 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
HOXA1P49639 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.57□□□□□ -2
HOXA1P49639 RNU6-942P-201ENST00000363002 107 ntBASIC2.57□□□□□ -2
HOXA1P49639 RNU6-1317P-201ENST00000364582 104 ntBASIC2.57□□□□□ -2
HOXA1P49639 RNU1-100P-201ENST00000365255 165 ntBASIC2.57□□□□□ -2
HOXA1P49639 RNU6-1297P-201ENST00000384415 104 ntBASIC2.57□□□□□ -2
HOXA1P49639 MIR517A-201ENST00000385001 87 ntBASIC2.57□□□□□ -2
HOXA1P49639 Y_RNA.579-201ENST00000390939 94 ntBASIC2.57□□□□□ -2
HOXA1P49639 AL360182.1-201ENST00000397433 468 ntBASIC2.57□□□□□ -2
HOXA1P49639 FTH1P15-201ENST00000406984 280 ntBASIC2.57□□□□□ -2
HOXA1P49639 RNU6-325P-201ENST00000411132 105 ntBASIC2.57□□□□□ -2
HOXA1P49639 RAB9AP3-201ENST00000412737 573 ntBASIC2.57□□□□□ -2
HOXA1P49639 NDUFS5P4-201ENST00000412983 318 ntBASIC2.57□□□□□ -2
HOXA1P49639 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.57□□□□□ -2
HOXA1P49639 NCOR1P3-201ENST00000420479 303 ntBASIC2.57□□□□□ -2
HOXA1P49639 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2.57□□□□□ -2
HOXA1P49639 UBE2V1P4-201ENST00000425374 344 ntBASIC2.57□□□□□ -2
HOXA1P49639 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.57□□□□□ -2
HOXA1P49639 FTH1P25-201ENST00000447665 469 ntBASIC2.57□□□□□ -2
HOXA1P49639 HMGN2P10-201ENST00000448085 265 ntBASIC2.57□□□□□ -2
HOXA1P49639 RAB9AP1-201ENST00000449393 573 ntBASIC2.57□□□□□ -2
HOXA1P49639 CYCSP35-201ENST00000451978 304 ntBASIC2.57□□□□□ -2
HOXA1P49639 RBMY2UP-201ENST00000453474 324 ntBASIC2.57□□□□□ -2
HOXA1P49639 MTCO3P10-201ENST00000455912 772 ntBASIC2.57□□□□□ -2
HOXA1P49639 RPS29P12-201ENST00000460178 152 ntBASIC2.57□□□□□ -2
HOXA1P49639 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.57□□□□□ -2
HOXA1P49639 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.57□□□□□ -2
HOXA1P49639 AC026782.1-201ENST00000512952 449 ntBASIC2.57□□□□□ -2
HOXA1P49639 Y_RNA.718-201ENST00000517110 102 ntBASIC2.57□□□□□ -2
HOXA1P49639 AC026403.1-201ENST00000518938 295 ntBASIC2.57□□□□□ -2
HOXA1P49639 AC006199.1-201ENST00000548728 219 ntBASIC2.57□□□□□ -2
HOXA1P49639 IMMP1LP2-201ENST00000552954 492 ntBASIC2.57□□□□□ -2
HOXA1P49639 AC021739.1-201ENST00000559631 174 ntBASIC2.57□□□□□ -2
HOXA1P49639 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.57□□□□□ -2
HOXA1P49639 AC006130.2-201ENST00000586202 326 ntBASIC2.57□□□□□ -2
HOXA1P49639 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.57□□□□□ -2
HOXA1P49639 AC008739.3-201ENST00000603262 127 ntBASIC2.57□□□□□ -2
HOXA1P49639 AC009314.1-201ENST00000603871 304 ntBASIC2.57□□□□□ -2
HOXA1P49639 AC009229.3-201ENST00000608056 282 ntBASIC2.57□□□□□ -2
HOXA1P49639 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.57□□□□□ -2
HOXA1P49639 AL121772.2-201ENST00000614331 297 ntBASIC2.57□□□□□ -2
HOXA1P49639 MIR6134-201ENST00000617606 109 ntBASIC2.57□□□□□ -2
HOXA1P49639 AC090574.1-201ENST00000623186 233 ntBASIC2.57□□□□□ -2
HOXA1P49639 AC002064.3-201ENST00000623448 346 ntBASIC2.57□□□□□ -2
HOXA1P49639 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC2.57□□□□□ -2
HOXA1P49639 AL034408.1-202ENST00000636088 415 ntBASIC2.57□□□□□ -2
HOXA1P49639 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.57□□□□□ -2
HOXA1P49639 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.56□□□□□ -2
HOXA1P49639 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC2.56□□□□□ -2
HOXA1P49639 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.56□□□□□ -2
HOXA1P49639 AC110491.1-201ENST00000562191 2010 ntBASIC2.56□□□□□ -2
HOXA1P49639 AC091564.4-201ENST00000533934 2194 ntBASIC2.56□□□□□ -2
HOXA1P49639 Y_RNA.11-201ENST00000362375 109 ntBASIC2.56□□□□□ -2
HOXA1P49639 RNU6-858P-201ENST00000362436 107 ntBASIC2.56□□□□□ -2
HOXA1P49639 SNORD62.1-201ENST00000362541 86 ntBASIC2.56□□□□□ -2
HOXA1P49639 RNA5SP119-201ENST00000362715 117 ntBASIC2.56□□□□□ -2
HOXA1P49639 RNU6-336P-201ENST00000364891 107 ntBASIC2.56□□□□□ -2
HOXA1P49639 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
HOXA1P49639 Y_RNA.404-201ENST00000383978 102 ntBASIC2.56□□□□□ -2
HOXA1P49639 AL030996.1-201ENST00000411430 235 ntBASIC2.56□□□□□ -2
HOXA1P49639 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.56□□□□□ -2
HOXA1P49639 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.56□□□□□ -2
HOXA1P49639 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.56□□□□□ -2
HOXA1P49639 RPS15AP5-201ENST00000436276 388 ntBASIC2.56□□□□□ -2
HOXA1P49639 AC007677.1-201ENST00000445757 515 ntBASIC2.56□□□□□ -2
HOXA1P49639 HIGD1AP2-201ENST00000446367 280 ntBASIC2.56□□□□□ -2
HOXA1P49639 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.56□□□□□ -2
HOXA1P49639 RPL30P15-201ENST00000457129 321 ntBASIC2.56□□□□□ -2
HOXA1P49639 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.56□□□□□ -2
HOXA1P49639 HMGN1P13-201ENST00000505795 138 ntBASIC2.56□□□□□ -2
HOXA1P49639 AK3P2-201ENST00000507976 429 ntBASIC2.56□□□□□ -2
HOXA1P49639 AC116655.1-201ENST00000508324 901 ntBASIC2.56□□□□□ -2
HOXA1P49639 RNU6-120P-201ENST00000516077 103 ntBASIC2.56□□□□□ -2
HOXA1P49639 Y_RNA.670-201ENST00000516255 105 ntBASIC2.56□□□□□ -2
HOXA1P49639 SNORA43.2-201ENST00000516652 128 ntBASIC2.56□□□□□ -2
HOXA1P49639 RNU6-1016P-201ENST00000516689 94 ntBASIC2.56□□□□□ -2
HOXA1P49639 RNU1-45P-201ENST00000517191 141 ntBASIC2.56□□□□□ -2
HOXA1P49639 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.56□□□□□ -2
HOXA1P49639 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.56□□□□□ -2
HOXA1P49639 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC2.56□□□□□ -2
HOXA1P49639 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.56□□□□□ -2
HOXA1P49639 AL356575.1-201ENST00000603008 283 ntBASIC2.56□□□□□ -2
HOXA1P49639 AC073657.2-201ENST00000605661 303 ntBASIC2.56□□□□□ -2
HOXA1P49639 U3.45-201ENST00000607547 219 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms