Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.75□□□□□ -1.97
MSH2P43246 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
MSH2P43246 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.75□□□□□ -1.97
MSH2P43246 AL365361.1-201ENST00000566942 3481 ntBASIC2.74□□□□□ -1.97
MSH2P43246 AL109809.4-201ENST00000603520 2185 ntBASIC2.74□□□□□ -1.97
MSH2P43246 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.74□□□□□ -1.97
MSH2P43246 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
MSH2P43246 RNU6-942P-201ENST00000363002 107 ntBASIC2.74□□□□□ -1.97
MSH2P43246 RNU6-525P-201ENST00000363685 104 ntBASIC2.74□□□□□ -1.97
MSH2P43246 SNORA38-201ENST00000363946 132 ntBASIC2.74□□□□□ -1.97
MSH2P43246 RNU6-266P-201ENST00000364225 107 ntBASIC2.74□□□□□ -1.97
MSH2P43246 RNU6-522P-201ENST00000364497 107 ntBASIC2.74□□□□□ -1.97
MSH2P43246 RNU6-748P-201ENST00000384648 107 ntBASIC2.74□□□□□ -1.97
MSH2P43246 FTH1P15-201ENST00000406984 280 ntBASIC2.74□□□□□ -1.97
MSH2P43246 AC096664.2-201ENST00000411843 406 ntBASIC2.74□□□□□ -1.97
MSH2P43246 RPLP0P7-201ENST00000416050 667 ntBASIC2.74□□□□□ -1.97
MSH2P43246 BX276092.3-201ENST00000424182 230 ntBASIC2.74□□□□□ -1.97
MSH2P43246 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.74□□□□□ -1.97
MSH2P43246 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC2.74□□□□□ -1.97
MSH2P43246 HIGD1AP2-201ENST00000446367 280 ntBASIC2.74□□□□□ -1.97
MSH2P43246 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.74□□□□□ -1.97
MSH2P43246 RNU6-1208P-201ENST00000459588 107 ntBASIC2.74□□□□□ -1.97
MSH2P43246 RPS27P27-201ENST00000498779 255 ntBASIC2.74□□□□□ -1.97
MSH2P43246 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.74□□□□□ -1.97
MSH2P43246 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.74□□□□□ -1.97
MSH2P43246 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.74□□□□□ -1.97
MSH2P43246 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.74□□□□□ -1.97
MSH2P43246 RNA5SP112-201ENST00000515937 99 ntBASIC2.74□□□□□ -1.97
MSH2P43246 AP004607.1-201ENST00000524456 203 ntBASIC2.74□□□□□ -1.97
MSH2P43246 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.74□□□□□ -1.97
MSH2P43246 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.74□□□□□ -1.97
MSH2P43246 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.74□□□□□ -1.97
MSH2P43246 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.74□□□□□ -1.97
MSH2P43246 AC024153.1-201ENST00000603103 365 ntBASIC2.74□□□□□ -1.97
MSH2P43246 AC092747.3-201ENST00000603769 301 ntBASIC2.74□□□□□ -1.97
MSH2P43246 AP000907.4-201ENST00000604143 237 ntBASIC2.74□□□□□ -1.97
MSH2P43246 AC103705.1-201ENST00000619013 241 ntBASIC2.74□□□□□ -1.97
MSH2P43246 Z69720.2-201ENST00000624755 279 ntBASIC2.74□□□□□ -1.97
MSH2P43246 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.74□□□□□ -1.97
MSH2P43246 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.73□□□□□ -1.97
MSH2P43246 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.73□□□□□ -1.97
MSH2P43246 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.73□□□□□ -1.97
MSH2P43246 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
MSH2P43246 Y_RNA.167-201ENST00000363735 109 ntBASIC2.73□□□□□ -1.97
MSH2P43246 RNA5SP181-201ENST00000410246 98 ntBASIC2.73□□□□□ -1.97
MSH2P43246 EEF1A1P41-201ENST00000414667 207 ntBASIC2.73□□□□□ -1.97
MSH2P43246 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.73□□□□□ -1.97
MSH2P43246 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.73□□□□□ -1.97
MSH2P43246 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.73□□□□□ -1.97
MSH2P43246 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.73□□□□□ -1.97
MSH2P43246 AC087884.1-201ENST00000469738 328 ntBASIC2.73□□□□□ -1.97
MSH2P43246 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.73□□□□□ -1.97
MSH2P43246 HIGD1AP13-201ENST00000509878 289 ntBASIC2.73□□□□□ -1.97
MSH2P43246 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.73□□□□□ -1.97
MSH2P43246 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.73□□□□□ -1.97
MSH2P43246 AC114781.4-201ENST00000513707 639 ntBASIC2.73□□□□□ -1.97
MSH2P43246 SNORA25.11-201ENST00000515935 105 ntBASIC2.73□□□□□ -1.97
MSH2P43246 SNORA31.15-201ENST00000516771 132 ntBASIC2.73□□□□□ -1.97
MSH2P43246 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.73□□□□□ -1.97
MSH2P43246 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.73□□□□□ -1.97
MSH2P43246 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.73□□□□□ -1.97
MSH2P43246 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.73□□□□□ -1.97
MSH2P43246 SNORA59B-202ENST00000578183 701 ntBASIC2.73□□□□□ -1.97
MSH2P43246 MIR5194-201ENST00000582634 120 ntBASIC2.73□□□□□ -1.97
MSH2P43246 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.73□□□□□ -1.97
MSH2P43246 AC093732.2-201ENST00000607950 274 ntBASIC2.73□□□□□ -1.97
MSH2P43246 AC069294.1-201ENST00000608397 350 ntBASIC2.73□□□□□ -1.97
MSH2P43246 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
MSH2P43246 AC002553.4-201ENST00000616896 331 ntBASIC2.73□□□□□ -1.97
MSH2P43246 AL449363.1-201ENST00000617815 186 ntBASIC2.73□□□□□ -1.97
MSH2P43246 RMST_7.1-201ENST00000621935 268 ntBASIC2.73□□□□□ -1.97
MSH2P43246 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.73□□□□□ -1.97
MSH2P43246 ZNF271P-202ENST00000465539 1970 ntBASIC2.72□□□□□ -1.97
MSH2P43246 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
MSH2P43246 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
MSH2P43246 RNU6-486P-201ENST00000363116 107 ntBASIC2.72□□□□□ -1.97
MSH2P43246 UBA52P6-201ENST00000399822 382 ntBASIC2.72□□□□□ -1.97
MSH2P43246 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC2.72□□□□□ -1.97
MSH2P43246 EEF1B2P7-201ENST00000451177 676 ntBASIC2.72□□□□□ -1.97
MSH2P43246 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.72□□□□□ -1.97
MSH2P43246 HMGN2P26-201ENST00000463169 339 ntBASIC2.72□□□□□ -1.97
MSH2P43246 RPS29P26-201ENST00000477483 171 ntBASIC2.72□□□□□ -1.97
MSH2P43246 MRPL42P6-201ENST00000486397 371 ntBASIC2.72□□□□□ -1.97
MSH2P43246 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.72□□□□□ -1.97
MSH2P43246 SNORA14.1-201ENST00000516113 141 ntBASIC2.72□□□□□ -1.97
MSH2P43246 CYCSP27-201ENST00000527643 293 ntBASIC2.72□□□□□ -1.97
MSH2P43246 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.72□□□□□ -1.97
MSH2P43246 MIR5571-201ENST00000577998 113 ntBASIC2.72□□□□□ -1.97
MSH2P43246 AC105245.1-201ENST00000581934 244 ntBASIC2.72□□□□□ -1.97
MSH2P43246 AC135507.2-201ENST00000612443 309 ntBASIC2.72□□□□□ -1.97
MSH2P43246 AC104237.2-201ENST00000612456 443 ntBASIC2.72□□□□□ -1.97
MSH2P43246 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.72□□□□□ -1.97
MSH2P43246 MIR3662-201ENST00000637030 95 ntBASIC2.72□□□□□ -1.97
MSH2P43246 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
MSH2P43246 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.71□□□□□ -1.97
MSH2P43246 Y_RNA.248-201ENST00000364501 109 ntBASIC2.71□□□□□ -1.98
MSH2P43246 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
MSH2P43246 Y_RNA.615-201ENST00000410769 117 ntBASIC2.71□□□□□ -1.98
MSH2P43246 RNU6-373P-201ENST00000411247 98 ntBASIC2.71□□□□□ -1.98
MSH2P43246 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms