Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SNORA5B-201ENST00000363786 132 ntBASIC2.66□□□□□ -1.98
MSH3P20585 Y_RNA.324-201ENST00000365165 102 ntBASIC2.66□□□□□ -1.98
MSH3P20585 Y_RNA.414-201ENST00000384011 101 ntBASIC2.66□□□□□ -1.98
MSH3P20585 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.66□□□□□ -1.98
MSH3P20585 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.66□□□□□ -1.98
MSH3P20585 AL353729.1-201ENST00000425044 720 ntBASIC2.66□□□□□ -1.98
MSH3P20585 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.66□□□□□ -1.98
MSH3P20585 RPS29P20-201ENST00000489592 171 ntBASIC2.66□□□□□ -1.98
MSH3P20585 AIG1P1-201ENST00000503376 148 ntBASIC2.66□□□□□ -1.98
MSH3P20585 RN7SKP132-201ENST00000516001 208 ntBASIC2.66□□□□□ -1.98
MSH3P20585 SNORA19.2-201ENST00000516013 114 ntBASIC2.66□□□□□ -1.98
MSH3P20585 RNU6-875P-201ENST00000516488 106 ntBASIC2.66□□□□□ -1.98
MSH3P20585 RNU6-1183P-201ENST00000517054 60 ntBASIC2.66□□□□□ -1.98
MSH3P20585 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.66□□□□□ -1.98
MSH3P20585 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.66□□□□□ -1.98
MSH3P20585 AC243972.3-201ENST00000539655 198 ntBASIC2.66□□□□□ -1.98
MSH3P20585 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.66□□□□□ -1.98
MSH3P20585 AP000763.2-201ENST00000540641 163 ntBASIC2.66□□□□□ -1.98
MSH3P20585 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.66□□□□□ -1.98
MSH3P20585 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
MSH3P20585 MIR5692C1-201ENST00000585309 91 ntBASIC2.66□□□□□ -1.98
MSH3P20585 AC020895.1-201ENST00000595362 272 ntBASIC2.66□□□□□ -1.98
MSH3P20585 AL645944.1-201ENST00000603857 493 ntBASIC2.66□□□□□ -1.98
MSH3P20585 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
MSH3P20585 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
MSH3P20585 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
MSH3P20585 AC002064.3-201ENST00000623448 346 ntBASIC2.66□□□□□ -1.98
MSH3P20585 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
MSH3P20585 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.66□□□□□ -1.98
MSH3P20585 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.65□□□□□ -1.98
MSH3P20585 MTND4P12-201ENST00000498999 1377 ntBASIC2.65□□□□□ -1.98
MSH3P20585 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.65□□□□□ -1.99
MSH3P20585 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.65□□□□□ -1.99
MSH3P20585 Y_RNA.166-201ENST00000363730 102 ntBASIC2.65□□□□□ -1.99
MSH3P20585 SNORD113-7-201ENST00000363762 77 ntBASIC2.65□□□□□ -1.99
MSH3P20585 RNU6-658P-201ENST00000384606 106 ntBASIC2.65□□□□□ -1.99
MSH3P20585 AL360182.1-201ENST00000397433 468 ntBASIC2.65□□□□□ -1.99
MSH3P20585 FO393413.1-201ENST00000402892 195 ntBASIC2.65□□□□□ -1.99
MSH3P20585 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.65□□□□□ -1.99
MSH3P20585 AL356057.2-201ENST00000403318 432 ntBASIC2.65□□□□□ -1.99
MSH3P20585 MTND3P8-201ENST00000412909 339 ntBASIC2.65□□□□□ -1.99
MSH3P20585 NDUFS5P4-201ENST00000412983 318 ntBASIC2.65□□□□□ -1.99
MSH3P20585 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.65□□□□□ -1.99
MSH3P20585 PDCL2P1-201ENST00000419302 352 ntBASIC2.65□□□□□ -1.99
MSH3P20585 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.65□□□□□ -1.99
MSH3P20585 MRPL50P4-201ENST00000446432 475 ntBASIC2.65□□□□□ -1.99
MSH3P20585 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.65□□□□□ -1.99
MSH3P20585 SNORD109B-201ENST00000458961 67 ntBASIC2.65□□□□□ -1.99
MSH3P20585 SNORD109A-201ENST00000459128 67 ntBASIC2.65□□□□□ -1.99
MSH3P20585 RNU7-23P-201ENST00000459465 62 ntBASIC2.65□□□□□ -1.99
MSH3P20585 AC090525.1-201ENST00000479116 478 ntBASIC2.65□□□□□ -1.99
MSH3P20585 AC026801.1-201ENST00000497178 464 ntBASIC2.65□□□□□ -1.99
MSH3P20585 SEM1P1-201ENST00000506694 209 ntBASIC2.65□□□□□ -1.99
MSH3P20585 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.65□□□□□ -1.99
MSH3P20585 RNU6-864P-201ENST00000516256 108 ntBASIC2.65□□□□□ -1.99
MSH3P20585 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.65□□□□□ -1.99
MSH3P20585 MIR4782-201ENST00000577987 79 ntBASIC2.65□□□□□ -1.99
MSH3P20585 MIR4742-201ENST00000581069 85 ntBASIC2.65□□□□□ -1.99
MSH3P20585 MIR4635-201ENST00000583759 79 ntBASIC2.65□□□□□ -1.99
MSH3P20585 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.65□□□□□ -1.99
MSH3P20585 MTND4LP5-201ENST00000605152 292 ntBASIC2.65□□□□□ -1.99
MSH3P20585 AC009994.1-201ENST00000606889 253 ntBASIC2.65□□□□□ -1.99
MSH3P20585 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.65□□□□□ -1.99
MSH3P20585 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.65□□□□□ -1.99
MSH3P20585 FAM157A-202ENST00000615155 405 ntBASIC2.65□□□□□ -1.99
MSH3P20585 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.65□□□□□ -1.99
MSH3P20585 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.65□□□□□ -1.99
MSH3P20585 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.65□□□□□ -1.99
MSH3P20585 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
MSH3P20585 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
MSH3P20585 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.64□□□□□ -1.99
MSH3P20585 AC008669.1-201ENST00000565823 2178 ntBASIC2.64□□□□□ -1.99
MSH3P20585 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.64□□□□□ -1.99
MSH3P20585 RNU6-859P-201ENST00000362728 107 ntBASIC2.64□□□□□ -1.99
MSH3P20585 Y_RNA.301-201ENST00000364990 103 ntBASIC2.64□□□□□ -1.99
MSH3P20585 MIR10A-201ENST00000385043 110 ntBASIC2.64□□□□□ -1.99
MSH3P20585 AL122016.1-201ENST00000403365 367 ntBASIC2.64□□□□□ -1.99
MSH3P20585 RN7SKP32-201ENST00000410167 303 ntBASIC2.64□□□□□ -1.99
MSH3P20585 AL096701.2-201ENST00000416920 238 ntBASIC2.64□□□□□ -1.99
MSH3P20585 HMGB1P9-201ENST00000429856 646 ntBASIC2.64□□□□□ -1.99
MSH3P20585 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.64□□□□□ -1.99
MSH3P20585 AC098831.1-201ENST00000440661 216 ntBASIC2.64□□□□□ -1.99
MSH3P20585 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.64□□□□□ -1.99
MSH3P20585 AC233279.1-201ENST00000455300 423 ntBASIC2.64□□□□□ -1.99
MSH3P20585 RPL26P9-201ENST00000457466 433 ntBASIC2.64□□□□□ -1.99
MSH3P20585 AP001486.1-201ENST00000463339 476 ntBASIC2.64□□□□□ -1.99
MSH3P20585 RPS27P26-201ENST00000494583 239 ntBASIC2.64□□□□□ -1.99
MSH3P20585 TRBVA-201ENST00000498804 316 ntBASIC2.64□□□□□ -1.99
MSH3P20585 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.64□□□□□ -1.99
MSH3P20585 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.64□□□□□ -1.99
MSH3P20585 RNA5SP356-201ENST00000515972 94 ntBASIC2.64□□□□□ -1.99
MSH3P20585 RNU7-30P-201ENST00000516835 62 ntBASIC2.64□□□□□ -1.99
MSH3P20585 SCOCP1-201ENST00000554676 349 ntBASIC2.64□□□□□ -1.99
MSH3P20585 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.64□□□□□ -1.99
MSH3P20585 MIR3942-201ENST00000585264 109 ntBASIC2.64□□□□□ -1.99
MSH3P20585 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.64□□□□□ -1.99
MSH3P20585 AC008739.2-201ENST00000597006 317 ntBASIC2.64□□□□□ -1.99
MSH3P20585 APOOP1-201ENST00000604695 592 ntBASIC2.64□□□□□ -1.99
MSH3P20585 LARP7P1-201ENST00000605576 316 ntBASIC2.64□□□□□ -1.99
MSH3P20585 AC004852.3-201ENST00000614131 326 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms