Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 RNU6-914P-201ENST00000516749 109 ntBASIC0.85□□□□□ -2.27
TRAV1-1A0A0B4J248 SNORA31.17-201ENST00000516953 127 ntBASIC0.85□□□□□ -2.27
TRAV1-1A0A0B4J248 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC0.85□□□□□ -2.27
TRAV1-1A0A0B4J248 TRAV32-201ENST00000553993 340 ntBASIC0.85□□□□□ -2.27
TRAV1-1A0A0B4J248 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.85□□□□□ -2.27
TRAV1-1A0A0B4J248 AL157871.3-201ENST00000557231 293 ntBASIC0.85□□□□□ -2.27
TRAV1-1A0A0B4J248 MIR4421-201ENST00000578133 69 ntBASIC0.85□□□□□ -2.27
TRAV1-1A0A0B4J248 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.85□□□□□ -2.27
TRAV1-1A0A0B4J248 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.85□□□□□ -2.27
TRAV1-1A0A0B4J248 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC0.85□□□□□ -2.27
TRAV1-1A0A0B4J248 AL596327.1-201ENST00000603629 213 ntBASIC0.85□□□□□ -2.27
TRAV1-1A0A0B4J248 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC0.85□□□□□ -2.27
TRAV1-1A0A0B4J248 AC245297.2-201ENST00000610119 565 ntBASIC0.85□□□□□ -2.27
TRAV1-1A0A0B4J248 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 Y_RNA.33-201ENST00000362591 102 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 RNU6-462P-201ENST00000362659 105 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 RNA5SP493-201ENST00000364115 91 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 SNORA70.7-201ENST00000384159 133 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AC119751.3-201ENST00000399720 670 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 FCF1P10-201ENST00000407590 479 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 MIR1305-201ENST00000408300 86 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 RNA5SP390-201ENST00000410191 113 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 USP9YP33-201ENST00000412220 421 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 USP9YP35-201ENST00000435696 412 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AL353752.1-201ENST00000454946 260 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AC108059.3-201ENST00000456388 214 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 RNU7-95P-201ENST00000459222 64 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AC087477.1-201ENST00000465747 340 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 MTND1P3-201ENST00000484956 952 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 RPL30P1-201ENST00000488676 339 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 Y_RNA.676-201ENST00000516393 96 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AC174048.1-201ENST00000603389 144 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AC123912.5-201ENST00000605470 343 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AL359821.1-201ENST00000605519 182 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AL355472.4-201ENST00000610233 626 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AL353770.2-201ENST00000620024 78 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AC022513.1-201ENST00000624512 117 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AC090517.3-201ENST00000625170 141 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 MIR1248-201ENST00000629190 106 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 AC008993.2-201ENST00000631744 806 ntBASIC0.84□□□□□ -2.27
TRAV1-1A0A0B4J248 NF1-214ENST00000490416 1329 ntTSL 3 BASIC0.84□□□□□ -2.28
TRAV1-1A0A0B4J248 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 RNU6-858P-201ENST00000362436 107 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 SNORA63.3-201ENST00000362682 132 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 RNU4-91P-201ENST00000364778 135 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 MIR29B2-201ENST00000385055 81 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 RPL37P10-201ENST00000412884 288 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 NCOR1P3-201ENST00000420479 303 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 AL365338.1-201ENST00000422282 858 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 AL669831.1-202ENST00000428504 417 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 CBX3P6-201ENST00000430257 527 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 AL022238.1-201ENST00000442557 355 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 RNU6-333P-201ENST00000459117 107 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 RPS26P55-201ENST00000471178 356 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 HMGB1P30-201ENST00000492455 606 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 RNA5SP216-201ENST00000516111 123 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 RNU6-965P-201ENST00000516721 96 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 MTCYBP33-201ENST00000575007 1130 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 HSPE1P19-201ENST00000603327 295 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 AC112220.2-201ENST00000605513 533 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 AC022893.3-201ENST00000607665 437 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 AC018926.1-201ENST00000616335 435 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 AL159153.1-201ENST00000619688 317 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 AP000943.4-201ENST00000622912 357 ntBASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.83□□□□□ -2.28
TRAV1-1A0A0B4J248 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 RNU6-112P-201ENST00000363599 104 ntBASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 Y_RNA.327-201ENST00000365201 102 ntBASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 RNU6-395P-201ENST00000365662 106 ntBASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 SMIM11P1-201ENST00000369586 178 ntBASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 RNU6-72P-201ENST00000384285 79 ntBASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 SNORA17.3-201ENST00000391159 129 ntBASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 AC139712.2-201ENST00000424302 339 ntBASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 TIMM9P1-201ENST00000436122 256 ntBASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 MTND2P4-201ENST00000445034 1004 ntBASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 MTND1P16-201ENST00000465177 898 ntBASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 RPL30P12-201ENST00000474666 353 ntBASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 AC108729.1-201ENST00000487812 947 ntBASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC0.82□□□□□ -2.28
TRAV1-1A0A0B4J248 AL356057.1-201ENST00000533798 831 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms