Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AC117522.1-201ENST00000509821 380 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AP005639.2-201ENST00000527592 928 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AC078899.2-201ENST00000595282 212 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 NDUFA8P1-201ENST00000605525 367 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AL139286.2-201ENST00000606838 396 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AC008250.2-201ENST00000615261 205 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AC092656.1-203ENST00000624134 423 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AL603839.4-201ENST00000624658 1005 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AC019226.2-201ENST00000625973 424 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AC138393.1-203ENST00000327086 343 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 MIR412-201ENST00000362142 91 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U8.2-201ENST00000363156 134 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 RNU1-23P-201ENST00000363361 144 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 Y_RNA.169-201ENST00000363745 96 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 RNY1P12-201ENST00000364251 105 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 RNU6-371P-201ENST00000364283 108 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 RNU6-384P-201ENST00000364900 104 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 SNORD48-201ENST00000364953 64 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 MIR518A2-201ENST00000384966 87 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AC019129.1-201ENST00000403786 261 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 RNU2-2P-201ENST00000410396 191 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 RPL21P90-201ENST00000415692 466 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AC138623.1-201ENST00000418060 216 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 RPL31P63-201ENST00000422565 375 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AL365203.2-201ENST00000423444 196 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 MED13P1-201ENST00000428342 171 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AL022238.1-201ENST00000442557 355 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AC003071.1-201ENST00000451219 789 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 MTCYBP1-201ENST00000454315 1119 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 snoU109.1-201ENST00000459339 135 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AC117503.1-201ENST00000472241 394 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 Y_RNA.717-201ENST00000517106 92 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AC007375.1-201ENST00000554513 578 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 MIR548AC-201ENST00000585049 88 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AC010928.2-201ENST00000588017 287 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AL078605.1-201ENST00000603529 500 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AC090578.1-201ENST00000604955 591 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AC012360.2-201ENST00000609349 391 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AC093788.1-201ENST00000609356 927 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U2.15-201ENST00000611544 191 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U2.16-201ENST00000613119 191 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U2.12-201ENST00000613778 191 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U2.20-201ENST00000613956 192 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U2.9-201ENST00000615427 191 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U2.11-201ENST00000616345 191 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U2.2-201ENST00000616535 191 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U2.3-201ENST00000617785 191 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U6.42-201ENST00000618440 107 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U2.19-201ENST00000618602 191 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 RNU2-1-201ENST00000618664 191 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U2.6-201ENST00000619225 191 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U2.5-201ENST00000619465 191 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 U2.10-201ENST00000620268 191 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 AL359740.1-201ENST00000624340 592 ntBASIC1.59□□□□□ -2.15
EXOSC4Q9NPD3 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 RNU4-21P-201ENST00000362802 126 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 SNORD14B-201ENST00000364533 90 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 RNU6-234P-201ENST00000365229 104 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 RNA5SP240-201ENST00000365355 128 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 RNU6-72P-201ENST00000384285 79 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 MT-TH-201ENST00000387441 69 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 SNORA40.3-201ENST00000390964 122 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 MIR1302-8-201ENST00000408342 128 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 EEF1A1P40-201ENST00000412883 573 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 AL445685.2-201ENST00000422551 342 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 AC008267.5-201ENST00000424928 265 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 AL627311.1-201ENST00000431514 115 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 AL360271.2-201ENST00000447710 161 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 MED28P2-201ENST00000475771 317 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 RNU1-86P-201ENST00000516108 154 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 Y_RNA.687-201ENST00000516558 91 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 RNU1-107P-201ENST00000516617 154 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 SNORA48.11-201ENST00000517015 89 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 AC034114.1-201ENST00000520293 285 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 AC091544.4-201ENST00000555268 342 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 MIR4648-201ENST00000580107 72 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms