Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.77
CCDC113Q9H0I3 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 AC009541.1-201ENST00000438279 2662 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 Y_RNA.5-201ENST00000362334 102 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 RNU6-1115P-201ENST00000362490 106 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 RNU6-692P-201ENST00000384496 107 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 RNU6-19P-201ENST00000384718 107 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 DBIP2-201ENST00000419076 262 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 NUP35P1-201ENST00000422734 947 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 PMCHL1-202ENST00000423102 261 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 HMGN2P31-201ENST00000432430 273 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 SETP5-201ENST00000437270 562 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 MTND4P19-201ENST00000446659 478 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 AL441985.1-201ENST00000457727 251 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 MED28P2-201ENST00000475771 317 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 RNU6-120P-201ENST00000516077 103 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 SNORD116.3-201ENST00000517176 78 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 RN7SKP295-201ENST00000517264 153 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 7SK.7-201ENST00000603504 247 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 AL049781.1-201ENST00000623195 3585 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 MTND5P9-201ENST00000503854 1755 ntBASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC113Q9H0I3 AC032011.1-201ENST00000611703 1549 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 RNY1P16-201ENST00000363063 111 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 Y_RNA.123-201ENST00000363338 102 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 U3.6-201ENST00000363622 211 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 Y_RNA.533-201ENST00000384596 114 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 Z98941.1-201ENST00000407764 100 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 RNA5SP44-201ENST00000410446 133 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 RNU2-49P-201ENST00000410666 184 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 AC023141.4-201ENST00000412031 328 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 AC093578.1-201ENST00000415219 368 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 AL358232.1-201ENST00000448030 501 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 AC107626.1-201ENST00000471084 183 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 AC022447.4-201ENST00000504053 364 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 SLC25A15P5-201ENST00000508033 253 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 SNORA31.21-201ENST00000517180 77 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 AP001836.1-201ENST00000604675 523 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 AC006157.1-201ENST00000611750 366 ntBASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC113Q9H0I3 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 Y_RNA.252-201ENST00000364556 101 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 SNORA33.2-201ENST00000365413 134 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 RNU6-639P-201ENST00000384074 107 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 MIR591-201ENST00000385290 95 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 AP000275.1-201ENST00000411943 390 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 RPS29P4-201ENST00000414733 161 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 AC243428.1-201ENST00000421099 264 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 AC099799.1-201ENST00000439809 192 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 RBMY2UP-201ENST00000453474 324 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 AC005034.5-201ENST00000604219 466 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 CEP170P1-201ENST00000502249 4587 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 AL353746.1-201ENST00000566293 6881 ntBASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC113Q9H0I3 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC113Q9H0I3 ZNF299P-201ENST00000406845 1804 ntBASIC3.93□□□□□ -1.78
CCDC113Q9H0I3 AL021368.2-201ENST00000606125 5352 ntBASIC3.93□□□□□ -1.78
CCDC113Q9H0I3 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC113Q9H0I3 RNU1-140P-201ENST00000365040 165 ntBASIC3.93□□□□□ -1.78
CCDC113Q9H0I3 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.93□□□□□ -1.78
CCDC113Q9H0I3 MIR606-201ENST00000384851 96 ntBASIC3.93□□□□□ -1.78
CCDC113Q9H0I3 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC113Q9H0I3 AC018865.2-201ENST00000423631 129 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms