Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC009310.1-201ENST00000414414 451 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AIMP1P2-201ENST00000425294 312 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AC009414.1-201ENST00000427200 443 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 MTND5P15-201ENST00000434246 349 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AL162591.2-201ENST00000449634 317 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AC012671.1-201ENST00000451912 203 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 RPS29P33-201ENST00000456717 146 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AC117440.1-201ENST00000474107 571 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 Y_RNA.683-201ENST00000516508 93 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AP006245.1-201ENST00000522549 120 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 RPL21P7-201ENST00000557463 483 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AC010201.1-201ENST00000605051 540 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 SNORD113-5-201ENST00000607261 78 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 BX322639.1-202ENST00000423987 2213 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 snoU2_19.1-201ENST00000362361 80 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 RNU6-1266P-201ENST00000362794 105 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 RNU1-44P-201ENST00000384453 163 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 Y_RNA.498-201ENST00000384460 102 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 Y_RNA.539-201ENST00000384635 107 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 MIR141-201ENST00000384975 95 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 SETP5-201ENST00000437270 562 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 HMGN2P20-201ENST00000437531 273 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 AC011753.3-201ENST00000443436 406 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 AC009220.1-201ENST00000451614 275 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 AC007215.1-201ENST00000464893 276 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 RPL23AP65-201ENST00000475608 468 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 SNORA70.14-201ENST00000516205 110 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 TVP23BP1-201ENST00000557500 617 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 RNU1-30P-201ENST00000606575 163 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 PCGEM1.1-201ENST00000613431 131 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 uc_338.18-201ENST00000615451 175 ntBASIC3.47□□□□□ -1.85
CCDC140Q96MF4 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.47□□□□□ -1.85
CCDC140Q96MF4 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
CCDC140Q96MF4 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
CCDC140Q96MF4 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 MFSD8-216ENST00000641147 4009 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 RNU6-655P-201ENST00000362858 107 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 RNU5F-3P-201ENST00000363767 117 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 RNA5SP505-201ENST00000364748 108 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 RNU6-1175P-201ENST00000365200 107 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 RNU6-290P-201ENST00000365212 101 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 RNU6-793P-201ENST00000384233 104 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 RNU1-57P-201ENST00000384491 166 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 RPS16P5-201ENST00000406501 404 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 MIR320B2-201ENST00000408479 138 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 RPL7AP25-201ENST00000423357 805 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 RPEP3-201ENST00000425462 676 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 UQCRBP2-201ENST00000447827 297 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 AL358232.1-201ENST00000448030 501 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 AC091179.3-201ENST00000474761 144 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 RN7SL481P-201ENST00000477764 299 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 RPL23AP70-201ENST00000483361 460 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 AC008897.1-201ENST00000494006 347 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 AC145146.1-201ENST00000496370 254 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 AC005176.2-201ENST00000596933 147 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms