Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNU6-395P-201ENST00000365662 106 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 Y_RNA.500-201ENST00000384466 111 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 MIR221-201ENST00000385135 110 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
VPS39Q96JC1 AL512604.1-201ENST00000404812 257 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 RNA5SP111-201ENST00000411386 101 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS39Q96JC1 AC016831.2-201ENST00000417179 352 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS39Q96JC1 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS39Q96JC1 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 AL136380.1-201ENST00000447970 162 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS39Q96JC1 SNORA59A-201ENST00000459326 152 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 UBE2DNL-203ENST00000474922 222 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 AC079140.3-201ENST00000511111 550 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.19□□□□□ -2.06
VPS39Q96JC1 AC112206.3-201ENST00000514578 389 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS39Q96JC1 RNA5SP200-201ENST00000516360 103 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 RNA5SP281-201ENST00000516504 135 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 RNU6-430P-201ENST00000517078 107 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.19□□□□□ -2.06
VPS39Q96JC1 AC233702.2-202ENST00000562547 291 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS39Q96JC1 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS39Q96JC1 AC022202.1-201ENST00000613515 211 ntBASIC2.19□□□□□ -2.06
VPS39Q96JC1 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.19□□□□□ -2.06
VPS39Q96JC1 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.19□□□□□ -2.06
VPS39Q96JC1 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
VPS39Q96JC1 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.18□□□□□ -2.06
VPS39Q96JC1 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
VPS39Q96JC1 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
VPS39Q96JC1 RNA5SP289-201ENST00000362332 137 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 Y_RNA.51-201ENST00000362725 102 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 SNORD115-7-201ENST00000365306 82 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 RNA5SP37-201ENST00000365420 130 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
VPS39Q96JC1 RNU6-456P-201ENST00000384493 107 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 EEF1A1P40-201ENST00000412883 573 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 GPR143P-201ENST00000434155 205 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 PMCHL2-203ENST00000457791 237 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS39Q96JC1 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS39Q96JC1 OR5AQ1P-201ENST00000527596 927 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 AP000873.5-201ENST00000533906 236 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS39Q96JC1 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS39Q96JC1 AC136619.2-201ENST00000563361 631 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 MTND1P15-201ENST00000579262 949 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 LRRC37A5P-203ENST00000580181 585 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 AC008749.1-201ENST00000597650 306 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 AC245014.2-201ENST00000603689 287 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 AC246785.4-201ENST00000605374 287 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 AL139286.2-201ENST00000606838 396 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 AL359547.2-201ENST00000615810 418 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 AC010378.1-201ENST00000619270 362 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 AC011155.2-201ENST00000623202 216 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 AC092656.1-203ENST00000624134 423 ntBASIC2.18□□□□□ -2.06
VPS39Q96JC1 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
VPS39Q96JC1 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.17□□□□□ -2.06
VPS39Q96JC1 RNU6-858P-201ENST00000362436 107 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 RNU6-179P-201ENST00000363350 107 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 RNU6-371P-201ENST00000364283 108 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 Y_RNA.381-201ENST00000365666 102 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 RNU6-116P-201ENST00000384042 109 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 SNORA40.19-201ENST00000390846 128 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 AC068050.1-201ENST00000394891 380 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 RNU2-9P-201ENST00000410194 145 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 MTND1P23-201ENST00000416931 372 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS39Q96JC1 MTCO2P11-201ENST00000431069 680 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.17□□□□□ -2.06
VPS39Q96JC1 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS39Q96JC1 DNAJC19P4-201ENST00000440115 345 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.17□□□□□ -2.06
VPS39Q96JC1 AL360271.2-201ENST00000447710 161 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS39Q96JC1 RPS29P15-201ENST00000458329 171 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 RPL31P3-201ENST00000458430 332 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 AC104806.1-201ENST00000508720 308 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 AC034114.1-201ENST00000520293 285 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS39Q96JC1 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.17□□□□□ -2.06
VPS39Q96JC1 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS39Q96JC1 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS39Q96JC1 AC026271.5-201ENST00000577873 130 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 PIGPP4-201ENST00000584447 307 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 NDUFA8P1-201ENST00000605525 367 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 AL627230.6-201ENST00000611129 280 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 AC091834.1-201ENST00000614543 472 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.17□□□□□ -2.06
VPS39Q96JC1 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS39Q96JC1 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.17□□□□□ -2.06
VPS39Q96JC1 ZNF702P-202ENST00000434269 1966 ntBASIC2.17□□□□□ -2.06
VPS39Q96JC1 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS39Q96JC1 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS39Q96JC1 U3.13-201ENST00000364804 214 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
VPS39Q96JC1 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 135 ms