Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NOL8P1-201ENST00000508336 3529 ntBASIC3.9□□□□□ -1.78
RNF4P78317 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
RNF4P78317 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.78
RNF4P78317 Y_RNA.150-201ENST00000363562 102 ntBASIC3.9□□□□□ -1.79
RNF4P78317 RNU6-1280P-201ENST00000365211 107 ntBASIC3.9□□□□□ -1.79
RNF4P78317 RNU6-290P-201ENST00000365212 101 ntBASIC3.9□□□□□ -1.79
RNF4P78317 SNORD6-201ENST00000365444 73 ntBASIC3.9□□□□□ -1.79
RNF4P78317 RNU6-1035P-201ENST00000384477 107 ntBASIC3.9□□□□□ -1.79
RNF4P78317 RNU1-139P-201ENST00000391307 165 ntBASIC3.9□□□□□ -1.79
RNF4P78317 RPS26P8-201ENST00000393490 348 ntBASIC3.9□□□□□ -1.79
RNF4P78317 SNORD12B-201ENST00000410433 91 ntBASIC3.9□□□□□ -1.79
RNF4P78317 AC099548.1-201ENST00000421443 426 ntBASIC3.9□□□□□ -1.79
RNF4P78317 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.9□□□□□ -1.79
RNF4P78317 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.9□□□□□ -1.79
RNF4P78317 AC005002.2-201ENST00000438228 269 ntBASIC3.9□□□□□ -1.79
RNF4P78317 HSPE1P25-201ENST00000455484 251 ntBASIC3.9□□□□□ -1.79
RNF4P78317 RPL26P9-201ENST00000457466 433 ntBASIC3.9□□□□□ -1.79
RNF4P78317 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.9□□□□□ -1.79
RNF4P78317 RNU2-58P-201ENST00000516403 183 ntBASIC3.9□□□□□ -1.79
RNF4P78317 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.9□□□□□ -1.79
RNF4P78317 HSPE1P4-201ENST00000550617 308 ntBASIC3.9□□□□□ -1.79
RNF4P78317 AC027288.2-201ENST00000553028 243 ntBASIC3.9□□□□□ -1.79
RNF4P78317 AC024220.1-201ENST00000603675 484 ntBASIC3.9□□□□□ -1.79
RNF4P78317 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.9□□□□□ -1.79
RNF4P78317 U2.14-201ENST00000615943 113 ntBASIC3.9□□□□□ -1.79
RNF4P78317 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.9□□□□□ -1.79
RNF4P78317 FAM35BP-202ENST00000497389 3337 ntBASIC3.9□□□□□ -1.79
RNF4P78317 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
RNF4P78317 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
RNF4P78317 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
RNF4P78317 ZNF826P-207ENST00000622273 1910 ntBASIC3.89□□□□□ -1.79
RNF4P78317 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
RNF4P78317 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
RNF4P78317 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.89□□□□□ -1.79
RNF4P78317 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
RNF4P78317 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
RNF4P78317 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.89□□□□□ -1.79
RNF4P78317 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.89□□□□□ -1.79
RNF4P78317 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.89□□□□□ -1.79
RNF4P78317 Y_RNA.29-201ENST00000362570 113 ntBASIC3.89□□□□□ -1.79
RNF4P78317 RNU5B-2P-201ENST00000363036 113 ntBASIC3.89□□□□□ -1.79
RNF4P78317 RNU6-270P-201ENST00000364131 105 ntBASIC3.89□□□□□ -1.79
RNF4P78317 RNY1-201ENST00000364228 113 ntBASIC3.89□□□□□ -1.79
RNF4P78317 Y_RNA.319-201ENST00000365138 92 ntBASIC3.89□□□□□ -1.79
RNF4P78317 RNU6-142P-201ENST00000384019 107 ntBASIC3.89□□□□□ -1.79
RNF4P78317 U8.10-201ENST00000384260 133 ntBASIC3.89□□□□□ -1.79
RNF4P78317 RNA5SP213-201ENST00000391031 106 ntBASIC3.89□□□□□ -1.79
RNF4P78317 RNU4-30P-201ENST00000410245 143 ntBASIC3.89□□□□□ -1.79
RNF4P78317 NDUFS5P4-201ENST00000412983 318 ntBASIC3.89□□□□□ -1.79
RNF4P78317 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.89□□□□□ -1.79
RNF4P78317 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.89□□□□□ -1.79
RNF4P78317 WARS2P1-201ENST00000429678 537 ntBASIC3.89□□□□□ -1.79
RNF4P78317 GPM6BP3-201ENST00000442797 145 ntBASIC3.89□□□□□ -1.79
RNF4P78317 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.89□□□□□ -1.79
RNF4P78317 snoU13.6-201ENST00000458785 104 ntBASIC3.89□□□□□ -1.79
RNF4P78317 RNA5SP246-201ENST00000458909 119 ntBASIC3.89□□□□□ -1.79
RNF4P78317 AP006245.1-201ENST00000522549 120 ntBASIC3.89□□□□□ -1.79
RNF4P78317 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.89□□□□□ -1.79
RNF4P78317 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.89□□□□□ -1.79
RNF4P78317 MIR4643-201ENST00000577473 78 ntBASIC3.89□□□□□ -1.79
RNF4P78317 AL110115.1-201ENST00000614396 364 ntBASIC3.89□□□□□ -1.79
RNF4P78317 AC005296.1-201ENST00000616145 209 ntBASIC3.89□□□□□ -1.79
RNF4P78317 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.89□□□□□ -1.79
RNF4P78317 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.89□□□□□ -1.79
RNF4P78317 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
RNF4P78317 AC022336.2-201ENST00000568966 2538 ntBASIC3.89□□□□□ -1.79
RNF4P78317 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
RNF4P78317 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
RNF4P78317 ADAM3A-203ENST00000461344 2157 ntBASIC3.89□□□□□ -1.79
RNF4P78317 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.89□□□□□ -1.79
RNF4P78317 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.89□□□□□ -1.79
RNF4P78317 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
RNF4P78317 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
RNF4P78317 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
RNF4P78317 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
RNF4P78317 SNORD74.4-201ENST00000364129 80 ntBASIC3.88□□□□□ -1.79
RNF4P78317 Y_RNA.286-201ENST00000364813 102 ntBASIC3.88□□□□□ -1.79
RNF4P78317 MIR10B-201ENST00000385011 110 ntBASIC3.88□□□□□ -1.79
RNF4P78317 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
RNF4P78317 SNORD58.1-201ENST00000391313 66 ntBASIC3.88□□□□□ -1.79
RNF4P78317 RPL21P17-201ENST00000397467 475 ntBASIC3.88□□□□□ -1.79
RNF4P78317 RNU6-1001P-201ENST00000411265 100 ntBASIC3.88□□□□□ -1.79
RNF4P78317 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.88□□□□□ -1.79
RNF4P78317 AC096638.1-201ENST00000444678 216 ntBASIC3.88□□□□□ -1.79
RNF4P78317 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.88□□□□□ -1.79
RNF4P78317 RNA5SP310-201ENST00000459084 116 ntBASIC3.88□□□□□ -1.79
RNF4P78317 MED28P2-201ENST00000475771 317 ntBASIC3.88□□□□□ -1.79
RNF4P78317 RPS4XP22-201ENST00000480755 780 ntBASIC3.88□□□□□ -1.79
RNF4P78317 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.88□□□□□ -1.79
RNF4P78317 AC097462.2-201ENST00000504623 481 ntBASIC3.88□□□□□ -1.79
RNF4P78317 SERF1AP1-201ENST00000514575 187 ntBASIC3.88□□□□□ -1.79
RNF4P78317 MIR2114-201ENST00000516645 80 ntBASIC3.88□□□□□ -1.79
RNF4P78317 Y_RNA.700-201ENST00000516806 100 ntBASIC3.88□□□□□ -1.79
RNF4P78317 SNORA31.23-201ENST00000517219 133 ntBASIC3.88□□□□□ -1.79
RNF4P78317 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.88□□□□□ -1.79
RNF4P78317 CR383656.8-201ENST00000549046 145 ntBASIC3.88□□□□□ -1.79
RNF4P78317 MTND6P33-201ENST00000571794 183 ntBASIC3.88□□□□□ -1.79
RNF4P78317 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.88□□□□□ -1.79
RNF4P78317 AL591034.3-201ENST00000605511 685 ntBASIC3.88□□□□□ -1.79
RNF4P78317 AC012531.5-201ENST00000611375 151 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 143.7 ms