Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU6-1203P-201ENST00000410703 110 ntBASIC3.55□□□□□ -1.84
MSX2P35548 RNU2-25P-201ENST00000411041 191 ntBASIC3.55□□□□□ -1.84
MSX2P35548 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.55□□□□□ -1.84
MSX2P35548 MTND3P9-201ENST00000429526 346 ntBASIC3.55□□□□□ -1.84
MSX2P35548 AL136097.1-201ENST00000456945 913 ntBASIC3.55□□□□□ -1.84
MSX2P35548 AL049830.2-201ENST00000480072 201 ntBASIC3.55□□□□□ -1.84
MSX2P35548 AC091167.1-201ENST00000492017 396 ntBASIC3.55□□□□□ -1.84
MSX2P35548 AC139453.3-201ENST00000493276 369 ntBASIC3.55□□□□□ -1.84
MSX2P35548 HMGB1P35-201ENST00000503360 598 ntBASIC3.55□□□□□ -1.84
MSX2P35548 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
MSX2P35548 AC067942.3-201ENST00000512025 362 ntBASIC3.55□□□□□ -1.84
MSX2P35548 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.55□□□□□ -1.84
MSX2P35548 SNORA31.9-201ENST00000516429 84 ntBASIC3.55□□□□□ -1.84
MSX2P35548 SNORA31.19-201ENST00000517079 126 ntBASIC3.55□□□□□ -1.84
MSX2P35548 RNA5SP290-201ENST00000517133 127 ntBASIC3.55□□□□□ -1.84
MSX2P35548 AC109479.2-201ENST00000517842 174 ntBASIC3.55□□□□□ -1.84
MSX2P35548 ATP5F1P5-201ENST00000526403 760 ntBASIC3.55□□□□□ -1.84
MSX2P35548 AC007458.1-201ENST00000542812 373 ntBASIC3.55□□□□□ -1.84
MSX2P35548 AC008011.1-201ENST00000545989 227 ntBASIC3.55□□□□□ -1.84
MSX2P35548 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.55□□□□□ -1.84
MSX2P35548 MIR4425-201ENST00000580572 84 ntBASIC3.55□□□□□ -1.84
MSX2P35548 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.55□□□□□ -1.84
MSX2P35548 RMST_8.1-201ENST00000610287 165 ntBASIC3.55□□□□□ -1.84
MSX2P35548 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.55□□□□□ -1.84
MSX2P35548 MIR3653-201ENST00000625572 110 ntBASIC3.55□□□□□ -1.84
MSX2P35548 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.55□□□□□ -1.84
MSX2P35548 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
MSX2P35548 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
MSX2P35548 AC007656.2-201ENST00000624902 4547 ntBASIC3.55□□□□□ -1.84
MSX2P35548 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.54□□□□□ -1.84
MSX2P35548 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
MSX2P35548 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
MSX2P35548 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
MSX2P35548 Y_RNA.84-201ENST00000363011 104 ntBASIC3.54□□□□□ -1.84
MSX2P35548 Y_RNA.117-201ENST00000363294 101 ntBASIC3.54□□□□□ -1.84
MSX2P35548 Y_RNA.416-201ENST00000384014 113 ntBASIC3.54□□□□□ -1.84
MSX2P35548 U1.1-201ENST00000384101 164 ntBASIC3.54□□□□□ -1.84
MSX2P35548 Y_RNA.458-201ENST00000384240 102 ntBASIC3.54□□□□□ -1.84
MSX2P35548 Y_RNA.539-201ENST00000384635 107 ntBASIC3.54□□□□□ -1.84
MSX2P35548 MIR493-201ENST00000385254 89 ntBASIC3.54□□□□□ -1.84
MSX2P35548 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.54□□□□□ -1.84
MSX2P35548 MIR1290-201ENST00000408735 78 ntBASIC3.54□□□□□ -1.84
MSX2P35548 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.54□□□□□ -1.84
MSX2P35548 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
MSX2P35548 AL691449.1-201ENST00000426570 421 ntBASIC3.54□□□□□ -1.84
MSX2P35548 MTCO3P29-201ENST00000432119 779 ntBASIC3.54□□□□□ -1.84
MSX2P35548 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.54□□□□□ -1.84
MSX2P35548 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
MSX2P35548 RPL21P11-201ENST00000461458 483 ntBASIC3.54□□□□□ -1.84
MSX2P35548 AC091153.1-201ENST00000466297 402 ntBASIC3.54□□□□□ -1.84
MSX2P35548 AK3P2-201ENST00000507976 429 ntBASIC3.54□□□□□ -1.84
MSX2P35548 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.54□□□□□ -1.84
MSX2P35548 RNU6-1231P-201ENST00000517185 103 ntBASIC3.54□□□□□ -1.84
MSX2P35548 AL590705.4-201ENST00000532209 134 ntBASIC3.54□□□□□ -1.84
MSX2P35548 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
MSX2P35548 AC005476.1-201ENST00000554427 397 ntBASIC3.54□□□□□ -1.84
MSX2P35548 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.54□□□□□ -1.84
MSX2P35548 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.54□□□□□ -1.84
MSX2P35548 AC007224.1-201ENST00000564410 144 ntBASIC3.54□□□□□ -1.84
MSX2P35548 AL355877.2-201ENST00000603670 358 ntBASIC3.54□□□□□ -1.84
MSX2P35548 AL645944.1-201ENST00000603857 493 ntBASIC3.54□□□□□ -1.84
MSX2P35548 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.54□□□□□ -1.84
MSX2P35548 SNORA62.6-201ENST00000606322 83 ntBASIC3.54□□□□□ -1.84
MSX2P35548 AC098479.1-201ENST00000609225 154 ntBASIC3.54□□□□□ -1.84
MSX2P35548 AL391261.4-201ENST00000616012 481 ntBASIC3.54□□□□□ -1.84
MSX2P35548 MIR8059-201ENST00000620427 81 ntBASIC3.54□□□□□ -1.84
MSX2P35548 AC090617.7-201ENST00000623952 126 ntBASIC3.54□□□□□ -1.84
MSX2P35548 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.54□□□□□ -1.84
MSX2P35548 AC243829.7-201ENST00000633081 225 ntBASIC3.54□□□□□ -1.84
MSX2P35548 Z75746.1-201ENST00000440243 2080 ntBASIC3.54□□□□□ -1.84
MSX2P35548 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
MSX2P35548 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.54□□□□□ -1.84
MSX2P35548 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.54□□□□□ -1.84
MSX2P35548 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
MSX2P35548 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.54□□□□□ -1.84
MSX2P35548 AC090740.1-201ENST00000623193 2262 ntBASIC3.54□□□□□ -1.84
MSX2P35548 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
MSX2P35548 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.54□□□□□ -1.84
MSX2P35548 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
MSX2P35548 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
MSX2P35548 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.53□□□□□ -1.84
MSX2P35548 AL021368.2-201ENST00000606125 5352 ntBASIC3.53□□□□□ -1.84
MSX2P35548 AC008568.2-201ENST00000623862 2313 ntBASIC3.53□□□□□ -1.84
MSX2P35548 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.53□□□□□ -1.84
MSX2P35548 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
MSX2P35548 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
MSX2P35548 SNORA57.1-201ENST00000391227 145 ntBASIC3.53□□□□□ -1.84
MSX2P35548 MIR190B-201ENST00000401119 79 ntBASIC3.53□□□□□ -1.84
MSX2P35548 MTCYBP2-201ENST00000407745 171 ntBASIC3.53□□□□□ -1.84
MSX2P35548 SDAD1P3-201ENST00000427380 333 ntBASIC3.53□□□□□ -1.84
MSX2P35548 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.53□□□□□ -1.84
MSX2P35548 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
MSX2P35548 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.53□□□□□ -1.84
MSX2P35548 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.53□□□□□ -1.84
MSX2P35548 AC105137.1-201ENST00000484355 562 ntBASIC3.53□□□□□ -1.84
MSX2P35548 AC010469.2-201ENST00000496412 480 ntBASIC3.53□□□□□ -1.84
MSX2P35548 GZMAP1-201ENST00000503054 631 ntBASIC3.53□□□□□ -1.84
MSX2P35548 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
MSX2P35548 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.53□□□□□ -1.84
MSX2P35548 MIR3160-1-201ENST00000577972 85 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms