Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNU6-143P-201ENST00000516942 93 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 RNU6-1231P-201ENST00000517185 103 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD9P28356 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD9P28356 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD9P28356 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.17□□□□□ -1.9
HOXD9P28356 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD9P28356 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXD9P28356 AC002545.1-201ENST00000592511 181 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 AC011890.2-201ENST00000613393 294 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 AC092608.2-201ENST00000624427 218 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 AL512643.1-201ENST00000635735 524 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD9P28356 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXD9P28356 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
HOXD9P28356 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXD9P28356 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HOXD9P28356 AC073325.2-201ENST00000339545 159 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 RNU6-512P-201ENST00000364438 103 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 RNU6-395P-201ENST00000365662 106 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 SNORA44-201ENST00000384584 132 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 MRPL42P3-201ENST00000401492 326 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 RNU6-985P-201ENST00000410182 104 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 RNU6-1077P-201ENST00000410506 102 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.16□□□□□ -1.9
HOXD9P28356 Z85995.1-201ENST00000415547 335 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXD9P28356 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXD9P28356 USMG5P1-201ENST00000425964 177 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 HMGB1P9-201ENST00000429856 646 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 USP9YP30-201ENST00000430729 455 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD9P28356 AC009237.8-201ENST00000445492 379 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 AL136097.1-201ENST00000456945 913 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 HMGB1P30-201ENST00000492455 606 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXD9P28356 SNORA25.10-201ENST00000515926 124 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 RNA5SP217-201ENST00000515959 91 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 SNORA64.4-201ENST00000516632 81 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 RNU6-711P-201ENST00000517255 106 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 AC009812.2-201ENST00000517657 457 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 CASP1P1-201ENST00000526345 212 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 ATP5F1P5-201ENST00000526403 760 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXD9P28356 AC023442.1-201ENST00000531247 422 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 AL157871.3-201ENST00000557231 293 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD9P28356 MIR4680-201ENST00000580906 66 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 AL451007.1-201ENST00000595491 289 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 ELOCP5-201ENST00000604924 333 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 RNU6-85P-201ENST00000605989 107 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HOXD9P28356 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
HOXD9P28356 MTND4P1-201ENST00000457501 1466 ntBASIC3.16□□□□□ -1.9
HOXD9P28356 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXD9P28356 Y_RNA.324-201ENST00000365165 102 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 Y_RNA.473-201ENST00000384333 102 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 SNORA41-201ENST00000384675 132 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
HOXD9P28356 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD9P28356 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD9P28356 FABP5P15-201ENST00000453566 214 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD9P28356 RNU7-187P-201ENST00000458985 68 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 RPL7P5-201ENST00000471472 736 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD9P28356 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXD9P28356 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.15□□□□□ -1.91
HOXD9P28356 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD9P28356 AP003122.3-201ENST00000526316 255 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 AC084851.1-201ENST00000529105 249 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 TRAV37-201ENST00000553906 342 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 EIF4BP1-201ENST00000554881 351 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 AL117187.1-201ENST00000555482 181 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD9P28356 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD9P28356 AC005899.2-201ENST00000584353 90 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 NUTF2P8-201ENST00000604593 363 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 AL591516.1-201ENST00000611326 274 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 AC090132.2-201ENST00000615881 347 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 AC027309.3-201ENST00000623419 351 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.15□□□□□ -1.91
HOXD9P28356 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD9P28356 SRP72P2-201ENST00000344851 1979 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD9P28356 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD9P28356 MIR22-201ENST00000362190 85 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 Y_RNA.33-201ENST00000362591 102 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 SNORA71.1-201ENST00000364523 117 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 RNU6-596P-201ENST00000365395 98 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 RNU6-842P-201ENST00000384269 107 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 RNY1P14-201ENST00000384426 108 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 RNU6-1179P-201ENST00000384667 107 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 AL356057.3-201ENST00000402607 340 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 RNA5SP38-201ENST00000410750 119 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 AC245291.1-201ENST00000419501 328 ntBASIC3.14□□□□□ -1.91
HOXD9P28356 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms