Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Gm5837-201ENSMUST00000191844 1369 ntBASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3bQ9ES34 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Gm8097-201ENSMUST00000117903 829 ntBASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Gm4535-201ENSMUST00000182274 558 ntBASIC19.15■□□□□ 0.66
Ube3bQ9ES34 AC161829.1-201ENSMUST00000220298 281 ntBASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Gm10355-201ENSMUST00000097146 517 ntBASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Gm18856-201ENSMUST00000178096 1374 ntBASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Gm15743-202ENSMUST00000182690 1901 ntBASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3bQ9ES34 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm4609-201ENSMUST00000106443 1002 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm5138-201ENSMUST00000113842 1002 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm15191-201ENSMUST00000117933 1000 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm12182-201ENSMUST00000118655 1008 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm13882-201ENSMUST00000120886 1002 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm10284-201ENSMUST00000145057 1005 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm10481-201ENSMUST00000179228 1002 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm2574-201ENSMUST00000181051 1002 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm3200-201ENSMUST00000181493 1002 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm8825-201ENSMUST00000182565 998 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm4518-201ENSMUST00000182638 718 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm8330-201ENSMUST00000182754 1008 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm4575-201ENSMUST00000182991 1002 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm8709-201ENSMUST00000183230 1012 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm37584-201ENSMUST00000193595 1290 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm10293-201ENSMUST00000076317 1002 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm6316-201ENSMUST00000082064 1020 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Gm8784-201ENSMUST00000222096 1435 ntBASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC19.14■□□□□ 0.65
Ube3bQ9ES34 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ube3bQ9ES34 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Ube3bQ9ES34 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Ube3bQ9ES34 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ube3bQ9ES34 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ube3bQ9ES34 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC19.13■□□□□ 0.65
Ube3bQ9ES34 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ube3bQ9ES34 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Ube3bQ9ES34 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ube3bQ9ES34 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC19.13■□□□□ 0.65
Ube3bQ9ES34 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC19.13■□□□□ 0.65
Ube3bQ9ES34 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ube3bQ9ES34 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC19.13■□□□□ 0.65
Ube3bQ9ES34 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ube3bQ9ES34 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms