Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-4Q9EQM3 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-4Q9EQM3 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
Nkx2-4Q9EQM3 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-4Q9EQM3 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
Nkx2-4Q9EQM3 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-4Q9EQM3 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-4Q9EQM3 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nkx2-4Q9EQM3 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nkx2-4Q9EQM3 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Gm13365-201ENSMUST00000121188 973 ntBASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Mir7023-201ENSMUST00000185093 64 ntBASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC16.53■□□□□ 0.24
Nkx2-4Q9EQM3 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Nkx2-4Q9EQM3 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nkx2-4Q9EQM3 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nkx2-4Q9EQM3 Gm13597-201ENSMUST00000121239 375 ntBASIC16.52■□□□□ 0.24
Nkx2-4Q9EQM3 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC16.52■□□□□ 0.24
Nkx2-4Q9EQM3 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC16.52■□□□□ 0.24
Nkx2-4Q9EQM3 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Nkx2-4Q9EQM3 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC16.52■□□□□ 0.24
Nkx2-4Q9EQM3 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Nkx2-4Q9EQM3 Mir6404-201ENSMUST00000183699 94 ntBASIC16.52■□□□□ 0.24
Nkx2-4Q9EQM3 AC147366.1-201ENSMUST00000227671 852 ntBASIC16.52■□□□□ 0.24
Nkx2-4Q9EQM3 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Nkx2-4Q9EQM3 AC132265.1-201ENSMUST00000219233 1665 ntBASIC16.52■□□□□ 0.23
Nkx2-4Q9EQM3 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC16.52■□□□□ 0.23
Nkx2-4Q9EQM3 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Nkx2-4Q9EQM3 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Nkx2-4Q9EQM3 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Mir7036b-201ENSMUST00000184791 63 ntBASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Gm7787-201ENSMUST00000216858 688 ntBASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Shroom3-211ENSMUST00000225438 5742 ntBASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Gm13332-201ENSMUST00000120451 1398 ntBASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nkx2-4Q9EQM3 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Gm43808-201ENSMUST00000202534 2065 ntBASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Fgf17-202ENSMUST00000227123 1336 ntBASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nkx2-4Q9EQM3 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms