Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf1Q9EPU0 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf1Q9EPU0 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Upf1Q9EPU0 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Upf1Q9EPU0 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf1Q9EPU0 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Upf1Q9EPU0 Gm8515-201ENSMUST00000194852 576 ntBASIC18.3■□□□□ 0.52
Upf1Q9EPU0 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC18.3■□□□□ 0.52
Upf1Q9EPU0 Gm6180-201ENSMUST00000065243 498 ntBASIC18.3■□□□□ 0.52
Upf1Q9EPU0 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Upf1Q9EPU0 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf1Q9EPU0 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
Upf1Q9EPU0 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf1Q9EPU0 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Gm12138-201ENSMUST00000122180 951 ntBASIC18.29■□□□□ 0.52
Upf1Q9EPU0 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC18.29■□□□□ 0.52
Upf1Q9EPU0 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf1Q9EPU0 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Hsf1-204ENSMUST00000226872 2104 ntBASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Gm27838-201ENSMUST00000184829 128 ntBASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Gm36967-201ENSMUST00000193814 266 ntBASIC18.28■□□□□ 0.52
Upf1Q9EPU0 AY702102-202ENSMUST00000194651 1173 ntBASIC18.28■□□□□ 0.52
Upf1Q9EPU0 CT025555.1-201ENSMUST00000225901 1217 ntBASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Upf1Q9EPU0 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf1Q9EPU0 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf1Q9EPU0 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Upf1Q9EPU0 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Upf1Q9EPU0 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Upf1Q9EPU0 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf1Q9EPU0 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Upf1Q9EPU0 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf1Q9EPU0 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Upf1Q9EPU0 Gm9063-201ENSMUST00000223299 582 ntBASIC18.27■□□□□ 0.52
Upf1Q9EPU0 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf1Q9EPU0 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf1Q9EPU0 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Upf1Q9EPU0 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Upf1Q9EPU0 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Upf1Q9EPU0 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Upf1Q9EPU0 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Upf1Q9EPU0 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Upf1Q9EPU0 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Upf1Q9EPU0 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Gm8410-201ENSMUST00000117225 605 ntBASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf1Q9EPU0 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Upf1Q9EPU0 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Upf1Q9EPU0 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Upf1Q9EPU0 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Upf1Q9EPU0 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Upf1Q9EPU0 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Upf1Q9EPU0 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms