Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Gm15442-201ENSMUST00000117905 1527 ntBASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ushbp1Q8R370 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC18.09■□□□□ 0.49
Ushbp1Q8R370 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ushbp1Q8R370 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ushbp1Q8R370 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ushbp1Q8R370 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.08■□□□□ 0.49
Ushbp1Q8R370 AC069562.2-201ENSMUST00000224644 2146 ntBASIC18.08■□□□□ 0.49
Ushbp1Q8R370 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ushbp1Q8R370 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Ushbp1Q8R370 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ushbp1Q8R370 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ushbp1Q8R370 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ushbp1Q8R370 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ushbp1Q8R370 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Ushbp1Q8R370 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC18.08■□□□□ 0.48
Ushbp1Q8R370 Ighv6-1-201ENSMUST00000193612 343 ntBASIC18.08■□□□□ 0.48
Ushbp1Q8R370 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC18.08■□□□□ 0.48
Ushbp1Q8R370 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Ushbp1Q8R370 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC18.08■□□□□ 0.48
Ushbp1Q8R370 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Ushbp1Q8R370 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ushbp1Q8R370 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Ushbp1Q8R370 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Ushbp1Q8R370 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ushbp1Q8R370 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ushbp1Q8R370 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms