Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Gm44450-201ENSMUST00000199528 114 ntBASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Gm11539-201ENSMUST00000119837 557 ntBASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ccdc28aQ8CEI3 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Gm9867-201ENSMUST00000192212 2647 ntBASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Gm36967-201ENSMUST00000193814 266 ntBASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Arhgef4-208ENSMUST00000211073 171 ntBASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ccdc28aQ8CEI3 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Ptprs-211ENSMUST00000223859 5588 ntBASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Gm715-201ENSMUST00000117865 831 ntBASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Gm13168-201ENSMUST00000121771 632 ntBASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Gm10653-202ENSMUST00000139570 835 ntBASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Gm43353-201ENSMUST00000199224 1295 ntBASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.04■□□□□ 0.32
Ccdc28aQ8CEI3 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc28aQ8CEI3 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc28aQ8CEI3 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc28aQ8CEI3 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc28aQ8CEI3 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC17.03■□□□□ 0.32
Ccdc28aQ8CEI3 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC17.03■□□□□ 0.32
Ccdc28aQ8CEI3 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc28aQ8CEI3 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc28aQ8CEI3 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc28aQ8CEI3 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms