Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Gm34391-201ENSMUST00000203706 907 ntBASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Birc2-201ENSMUST00000054878 378 ntBASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps53Q8CCB4 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Gm28659-201ENSMUST00000188013 759 ntBASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps53Q8CCB4 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC18.77■□□□□ 0.6
Vps53Q8CCB4 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vps53Q8CCB4 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vps53Q8CCB4 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Vps53Q8CCB4 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vps53Q8CCB4 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vps53Q8CCB4 AC164629.2-201ENSMUST00000217916 270 ntBASIC18.77■□□□□ 0.6
Vps53Q8CCB4 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Vps53Q8CCB4 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Vps53Q8CCB4 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vps53Q8CCB4 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vps53Q8CCB4 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vps53Q8CCB4 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Vps53Q8CCB4 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Vps53Q8CCB4 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Vps53Q8CCB4 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Vps53Q8CCB4 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Vps53Q8CCB4 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Vps53Q8CCB4 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Gm43514-201ENSMUST00000198852 424 ntBASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps53Q8CCB4 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Vps53Q8CCB4 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vps53Q8CCB4 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Vps53Q8CCB4 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vps53Q8CCB4 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Vps53Q8CCB4 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vps53Q8CCB4 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vps53Q8CCB4 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms