Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Gm12644-201ENSMUST00000119935 606 ntBASIC19.06■□□□□ 0.64
Trim56Q80VI1 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
Trim56Q80VI1 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Gm25745-201ENSMUST00000174945 133 ntBASIC19.05■□□□□ 0.64
Trim56Q80VI1 Gm27459-201ENSMUST00000184860 107 ntBASIC19.05■□□□□ 0.64
Trim56Q80VI1 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim56Q80VI1 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Gm7153-201ENSMUST00000117092 455 ntBASIC19.04■□□□□ 0.64
Trim56Q80VI1 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC19.04■□□□□ 0.64
Trim56Q80VI1 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Gm27741-201ENSMUST00000185060 237 ntBASIC19.04■□□□□ 0.64
Trim56Q80VI1 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC19.04■□□□□ 0.64
Trim56Q80VI1 AC160338.1-201ENSMUST00000214232 705 ntBASIC19.04■□□□□ 0.64
Trim56Q80VI1 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim56Q80VI1 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Wnt10b-206ENSMUST00000228546 2709 ntBASIC19.03■□□□□ 0.64
Trim56Q80VI1 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Gm7506-201ENSMUST00000207758 815 ntBASIC19.03■□□□□ 0.64
Trim56Q80VI1 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim56Q80VI1 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Trim56Q80VI1 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Gm25406-201ENSMUST00000157599 105 ntBASIC19.02■□□□□ 0.64
Trim56Q80VI1 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms