Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CtcfQ61164 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CtcfQ61164 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CtcfQ61164 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CtcfQ61164 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC17.81■□□□□ 0.44
CtcfQ61164 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
CtcfQ61164 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC17.81■□□□□ 0.44
CtcfQ61164 Gm11539-201ENSMUST00000119837 557 ntBASIC17.81■□□□□ 0.44
CtcfQ61164 Gm13436-201ENSMUST00000120418 567 ntBASIC17.81■□□□□ 0.44
CtcfQ61164 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CtcfQ61164 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC17.81■□□□□ 0.44
CtcfQ61164 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CtcfQ61164 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 AC115863.1-201ENSMUST00000214815 1813 ntBASIC17.81■□□□□ 0.44
CtcfQ61164 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
CtcfQ61164 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CtcfQ61164 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.8■□□□□ 0.44
CtcfQ61164 Sybu-209ENSMUST00000228639 4113 ntBASIC17.8■□□□□ 0.44
CtcfQ61164 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC17.8■□□□□ 0.44
CtcfQ61164 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC17.8■□□□□ 0.44
CtcfQ61164 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC17.8■□□□□ 0.44
CtcfQ61164 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC17.8■□□□□ 0.44
CtcfQ61164 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CtcfQ61164 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CtcfQ61164 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CtcfQ61164 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CtcfQ61164 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC17.79■□□□□ 0.44
CtcfQ61164 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC17.79■□□□□ 0.44
CtcfQ61164 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 Gm37055-201ENSMUST00000191866 133 ntBASIC17.79■□□□□ 0.44
CtcfQ61164 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC17.79■□□□□ 0.44
CtcfQ61164 Gm30025-201ENSMUST00000218555 728 ntBASIC17.79■□□□□ 0.44
CtcfQ61164 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC17.79■□□□□ 0.44
CtcfQ61164 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CtcfQ61164 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CtcfQ61164 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CtcfQ61164 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC17.78■□□□□ 0.44
CtcfQ61164 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CtcfQ61164 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CtcfQ61164 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC17.78■□□□□ 0.44
CtcfQ61164 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CtcfQ61164 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CtcfQ61164 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CtcfQ61164 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CtcfQ61164 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
CtcfQ61164 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CtcfQ61164 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CtcfQ61164 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CtcfQ61164 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CtcfQ61164 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC17.78■□□□□ 0.44
CtcfQ61164 Gm27463-201ENSMUST00000183569 57 ntBASIC17.78■□□□□ 0.44
CtcfQ61164 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CtcfQ61164 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CtcfQ61164 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CtcfQ61164 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CtcfQ61164 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC17.78■□□□□ 0.44
CtcfQ61164 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms