Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3bQ3ULL6 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Otx2os1-206ENSMUST00000228153 787 ntBASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Gm7367-201ENSMUST00000057611 492 ntBASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3bQ3ULL6 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Gm21362-201ENSMUST00000194272 928 ntBASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3bQ3ULL6 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 AC130671.1-201ENSMUST00000227384 1237 ntBASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Upf3bQ3ULL6 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Upf3bQ3ULL6 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Upf3bQ3ULL6 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Upf3bQ3ULL6 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Upf3bQ3ULL6 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Upf3bQ3ULL6 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Upf3bQ3ULL6 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Upf3bQ3ULL6 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms