Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC16.63■□□□□ 0.25
Sox9Q04887 Gm44335-201ENSMUST00000196879 141 ntBASIC16.63■□□□□ 0.25
Sox9Q04887 Gm44297-201ENSMUST00000198304 141 ntBASIC16.63■□□□□ 0.25
Sox9Q04887 Gm44346-201ENSMUST00000198851 141 ntBASIC16.63■□□□□ 0.25
Sox9Q04887 AC155252.2-201ENSMUST00000226946 680 ntBASIC16.63■□□□□ 0.25
Sox9Q04887 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox9Q04887 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC16.63■□□□□ 0.25
Sox9Q04887 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox9Q04887 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox9Q04887 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Sox9Q04887 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC16.63■□□□□ 0.25
Sox9Q04887 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox9Q04887 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox9Q04887 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Sox9Q04887 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox9Q04887 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Sox9Q04887 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Sox9Q04887 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC16.62■□□□□ 0.25
Sox9Q04887 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Sox9Q04887 Gm11424-201ENSMUST00000121929 829 ntBASIC16.62■□□□□ 0.25
Sox9Q04887 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Gm4899-201ENSMUST00000178708 719 ntBASIC16.62■□□□□ 0.25
Sox9Q04887 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC16.62■□□□□ 0.25
Sox9Q04887 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Fgf17-202ENSMUST00000227123 1336 ntBASIC16.62■□□□□ 0.25
Sox9Q04887 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC16.62■□□□□ 0.25
Sox9Q04887 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox9Q04887 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Sox9Q04887 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Sox9Q04887 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sox9Q04887 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Sox9Q04887 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
Sox9Q04887 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sox9Q04887 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Sox9Q04887 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC16.61■□□□□ 0.25
Sox9Q04887 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC16.61■□□□□ 0.25
Sox9Q04887 Gm37153-201ENSMUST00000193637 231 ntBASIC16.61■□□□□ 0.25
Sox9Q04887 Gm18622-201ENSMUST00000219361 595 ntBASIC16.61■□□□□ 0.25
Sox9Q04887 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sox9Q04887 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC16.61■□□□□ 0.25
Sox9Q04887 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sox9Q04887 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sox9Q04887 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sox9Q04887 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Sox9Q04887 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sox9Q04887 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Sox9Q04887 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Sox9Q04887 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
Sox9Q04887 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Sox9Q04887 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Sox9Q04887 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC16.6■□□□□ 0.25
Sox9Q04887 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC16.6■□□□□ 0.25
Sox9Q04887 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 Gm2308-201ENSMUST00000166539 1004 ntBASIC16.6■□□□□ 0.25
Sox9Q04887 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC16.6■□□□□ 0.25
Sox9Q04887 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Sox9Q04887 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC16.6■□□□□ 0.25
Sox9Q04887 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
Sox9Q04887 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Sox9Q04887 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox9Q04887 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox9Q04887 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC16.59■□□□□ 0.25
Sox9Q04887 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox9Q04887 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox9Q04887 Gm15743-202ENSMUST00000182690 1901 ntBASIC16.59■□□□□ 0.25
Sox9Q04887 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox9Q04887 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox9Q04887 Gm43808-201ENSMUST00000202534 2065 ntBASIC16.59■□□□□ 0.25
Sox9Q04887 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
Sox9Q04887 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
Sox9Q04887 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.59■□□□□ 0.25
Sox9Q04887 Gm17968-201ENSMUST00000194902 784 ntBASIC16.59■□□□□ 0.25
Sox9Q04887 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC16.59■□□□□ 0.25
Sox9Q04887 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC16.59■□□□□ 0.25
Sox9Q04887 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox9Q04887 Gm42939-201ENSMUST00000197514 2205 ntBASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 56.1 ms