Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Shmt1P50431 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Shmt1P50431 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Shmt1P50431 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Shmt1P50431 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shmt1P50431 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shmt1P50431 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shmt1P50431 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.07■□□□□ 0.32
Shmt1P50431 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Shmt1P50431 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shmt1P50431 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.07■□□□□ 0.32
Shmt1P50431 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Shmt1P50431 Gm12644-201ENSMUST00000119935 606 ntBASIC17.07■□□□□ 0.32
Shmt1P50431 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC17.07■□□□□ 0.32
Shmt1P50431 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.07■□□□□ 0.32
Shmt1P50431 Gm8349-201ENSMUST00000182720 1003 ntBASIC17.07■□□□□ 0.32
Shmt1P50431 Gm27459-201ENSMUST00000184860 107 ntBASIC17.07■□□□□ 0.32
Shmt1P50431 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.07■□□□□ 0.32
Shmt1P50431 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shmt1P50431 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shmt1P50431 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shmt1P50431 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shmt1P50431 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC17.07■□□□□ 0.32
Shmt1P50431 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shmt1P50431 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shmt1P50431 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Shmt1P50431 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Shmt1P50431 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Shmt1P50431 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC17.06■□□□□ 0.32
Shmt1P50431 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Shmt1P50431 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Shmt1P50431 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Shmt1P50431 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
Shmt1P50431 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Shmt1P50431 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Shmt1P50431 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Shmt1P50431 AC115863.1-201ENSMUST00000214815 1813 ntBASIC17.05■□□□□ 0.32
Shmt1P50431 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC17.05■□□□□ 0.32
Shmt1P50431 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Shmt1P50431 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17.05■□□□□ 0.32
Shmt1P50431 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 AC160338.1-201ENSMUST00000214232 705 ntBASIC17.05■□□□□ 0.32
Shmt1P50431 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.05■□□□□ 0.32
Shmt1P50431 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Shmt1P50431 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Shmt1P50431 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Shmt1P50431 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.04■□□□□ 0.32
Shmt1P50431 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC17.04■□□□□ 0.32
Shmt1P50431 Gm25745-201ENSMUST00000174945 133 ntBASIC17.04■□□□□ 0.32
Shmt1P50431 Gm43347-201ENSMUST00000200226 580 ntBASIC17.04■□□□□ 0.32
Shmt1P50431 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC17.04■□□□□ 0.32
Shmt1P50431 Mzt1-203ENSMUST00000227948 952 ntBASIC17.04■□□□□ 0.32
Shmt1P50431 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
Shmt1P50431 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Shmt1P50431 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
Shmt1P50431 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shmt1P50431 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shmt1P50431 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Shmt1P50431 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shmt1P50431 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shmt1P50431 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Shmt1P50431 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
Shmt1P50431 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shmt1P50431 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Shmt1P50431 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Shmt1P50431 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shmt1P50431 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shmt1P50431 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shmt1P50431 Gm44771-201ENSMUST00000206975 626 ntBASIC17.03■□□□□ 0.32
Shmt1P50431 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shmt1P50431 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shmt1P50431 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shmt1P50431 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms