Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC14.63□□□□□ -0.07
Rfx3P48381 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Rfx3P48381 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Rfx3P48381 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
Rfx3P48381 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC14.63□□□□□ -0.07
Rfx3P48381 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC14.63□□□□□ -0.07
Rfx3P48381 Gm11539-201ENSMUST00000119837 557 ntBASIC14.63□□□□□ -0.07
Rfx3P48381 Gm13436-201ENSMUST00000120418 567 ntBASIC14.63□□□□□ -0.07
Rfx3P48381 AC159205.6-201ENSMUST00000224935 887 ntBASIC14.63□□□□□ -0.07
Rfx3P48381 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC14.63□□□□□ -0.07
Rfx3P48381 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
Rfx3P48381 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Rfx3P48381 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Rfx3P48381 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Rfx3P48381 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rfx3P48381 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Rfx3P48381 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Rfx3P48381 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Rfx3P48381 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC14.62□□□□□ -0.07
Rfx3P48381 Gm44616-201ENSMUST00000206417 1732 ntBASIC14.62□□□□□ -0.07
Rfx3P48381 Gm7370-201ENSMUST00000219471 767 ntBASIC14.62□□□□□ -0.07
Rfx3P48381 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Rfx3P48381 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Rfx3P48381 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Rfx3P48381 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Rfx3P48381 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 Gm13186-201ENSMUST00000118031 316 ntBASIC14.61□□□□□ -0.07
Rfx3P48381 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Rfx3P48381 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 AC115863.1-201ENSMUST00000214815 1813 ntBASIC14.61□□□□□ -0.07
Rfx3P48381 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC14.61□□□□□ -0.07
Rfx3P48381 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 Spsb2-203ENSMUST00000112473 1322 ntBASIC14.61□□□□□ -0.07
Rfx3P48381 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC14.61□□□□□ -0.07
Rfx3P48381 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rfx3P48381 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Rfx3P48381 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Rfx3P48381 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rfx3P48381 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rfx3P48381 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Rfx3P48381 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rfx3P48381 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rfx3P48381 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Rfx3P48381 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Rfx3P48381 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Rfx3P48381 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Rfx3P48381 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC14.6□□□□□ -0.07
Rfx3P48381 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC14.6□□□□□ -0.07
Rfx3P48381 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Rfx3P48381 AC158538.1-201ENSMUST00000225870 294 ntBASIC14.6□□□□□ -0.07
Rfx3P48381 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Rfx3P48381 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rfx3P48381 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rfx3P48381 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rfx3P48381 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms