Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Sdc1P18828 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Sdc1P18828 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Sdc1P18828 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Sdc1P18828 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.27
Sdc1P18828 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Sdc1P18828 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Sdc1P18828 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Sdc1P18828 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Sdc1P18828 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Sdc1P18828 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sdc1P18828 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sdc1P18828 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Sdc1P18828 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sdc1P18828 Gm45760-201ENSMUST00000212190 1782 ntBASIC13.33□□□□□ -0.28
Sdc1P18828 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sdc1P18828 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC13.33□□□□□ -0.28
Sdc1P18828 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sdc1P18828 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Sdc1P18828 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Sdc1P18828 Gm43017-201ENSMUST00000198296 752 ntBASIC13.33□□□□□ -0.28
Sdc1P18828 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Sdc1P18828 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC13.33□□□□□ -0.28
Sdc1P18828 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
Sdc1P18828 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sdc1P18828 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC13.33□□□□□ -0.28
Sdc1P18828 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sdc1P18828 Flg-201ENSMUST00000050758 1488 ntBASIC13.33□□□□□ -0.28
Sdc1P18828 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC13.33□□□□□ -0.28
Sdc1P18828 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Sdc1P18828 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sdc1P18828 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Sdc1P18828 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sdc1P18828 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
Sdc1P18828 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
Sdc1P18828 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Sdc1P18828 Gm10654-201ENSMUST00000098653 1633 ntBASIC13.32□□□□□ -0.28
Sdc1P18828 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC13.32□□□□□ -0.28
Sdc1P18828 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Sdc1P18828 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC13.32□□□□□ -0.28
Sdc1P18828 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC13.32□□□□□ -0.28
Sdc1P18828 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC13.32□□□□□ -0.28
Sdc1P18828 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Sdc1P18828 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Sdc1P18828 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Sdc1P18828 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Sdc1P18828 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Sdc1P18828 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC13.32□□□□□ -0.28
Sdc1P18828 Gm44729-201ENSMUST00000206759 2052 ntBASIC13.32□□□□□ -0.28
Sdc1P18828 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sdc1P18828 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Sdc1P18828 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Sdc1P18828 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
Sdc1P18828 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
Sdc1P18828 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC13.31□□□□□ -0.28
Sdc1P18828 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC13.31□□□□□ -0.28
Sdc1P18828 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sdc1P18828 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms