Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prom1O54990 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prom1O54990 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prom1O54990 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Prom1O54990 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Prom1O54990 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prom1O54990 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prom1O54990 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.79■□□□□ 0.44
Prom1O54990 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prom1O54990 Gm6598-201ENSMUST00000202719 2615 ntBASIC17.79■□□□□ 0.44
Prom1O54990 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prom1O54990 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC17.79■□□□□ 0.44
Prom1O54990 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC17.79■□□□□ 0.44
Prom1O54990 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prom1O54990 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC17.79■□□□□ 0.44
Prom1O54990 AC117588.1-201ENSMUST00000228510 999 ntBASIC17.79■□□□□ 0.44
Prom1O54990 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prom1O54990 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prom1O54990 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prom1O54990 Gm16401-202ENSMUST00000197463 2074 ntBASIC17.79■□□□□ 0.44
Prom1O54990 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Prom1O54990 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Prom1O54990 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Prom1O54990 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prom1O54990 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prom1O54990 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
Prom1O54990 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC17.78■□□□□ 0.44
Prom1O54990 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
Prom1O54990 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prom1O54990 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prom1O54990 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Prom1O54990 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prom1O54990 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC17.78■□□□□ 0.44
Prom1O54990 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prom1O54990 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prom1O54990 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Prom1O54990 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Prom1O54990 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Prom1O54990 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Prom1O54990 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC17.77■□□□□ 0.44
Prom1O54990 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Prom1O54990 Gm6736-201ENSMUST00000166583 948 ntBASIC17.77■□□□□ 0.44
Prom1O54990 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.77■□□□□ 0.44
Prom1O54990 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC17.77■□□□□ 0.44
Prom1O54990 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Prom1O54990 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Prom1O54990 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Prom1O54990 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Prom1O54990 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Prom1O54990 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Prom1O54990 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
Prom1O54990 Grk6-207ENSMUST00000225925 2769 ntBASIC17.77■□□□□ 0.43
Prom1O54990 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Prom1O54990 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Prom1O54990 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC17.76■□□□□ 0.43
Prom1O54990 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC17.76■□□□□ 0.43
Prom1O54990 AC084391.1-201ENSMUST00000200651 141 ntBASIC17.76■□□□□ 0.43
Prom1O54990 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Gm10175-201ENSMUST00000086013 645 ntBASIC17.76■□□□□ 0.43
Prom1O54990 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Prom1O54990 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prom1O54990 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Prom1O54990 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Prom1O54990 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC17.75■□□□□ 0.43
Prom1O54990 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC17.75■□□□□ 0.43
Prom1O54990 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Prom1O54990 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC17.75■□□□□ 0.43
Prom1O54990 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Prom1O54990 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Prom1O54990 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms