Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Smarce1O54941 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Smarce1O54941 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarce1O54941 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarce1O54941 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarce1O54941 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC19.23■□□□□ 0.67
Smarce1O54941 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarce1O54941 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Smarce1O54941 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarce1O54941 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarce1O54941 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC19.23■□□□□ 0.67
Smarce1O54941 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.23■□□□□ 0.67
Smarce1O54941 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC19.23■□□□□ 0.67
Smarce1O54941 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Smarce1O54941 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC19.23■□□□□ 0.67
Smarce1O54941 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarce1O54941 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarce1O54941 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC19.23■□□□□ 0.67
Smarce1O54941 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarce1O54941 Gm42473-201ENSMUST00000201056 2291 ntBASIC19.23■□□□□ 0.67
Smarce1O54941 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Smarce1O54941 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Smarce1O54941 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarce1O54941 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Smarce1O54941 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
Smarce1O54941 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC19.22■□□□□ 0.67
Smarce1O54941 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Smarce1O54941 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Smarce1O54941 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarce1O54941 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Smarce1O54941 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smarce1O54941 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smarce1O54941 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarce1O54941 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarce1O54941 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC19.21■□□□□ 0.67
Smarce1O54941 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarce1O54941 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
Smarce1O54941 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smarce1O54941 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC19.21■□□□□ 0.67
Smarce1O54941 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smarce1O54941 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC19.21■□□□□ 0.67
Smarce1O54941 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC19.21■□□□□ 0.67
Smarce1O54941 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarce1O54941 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
Smarce1O54941 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
Smarce1O54941 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarce1O54941 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarce1O54941 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarce1O54941 AC153526.5-201ENSMUST00000218661 2147 ntBASIC19.21■□□□□ 0.67
Smarce1O54941 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarce1O54941 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarce1O54941 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC19.2■□□□□ 0.66
Smarce1O54941 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarce1O54941 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Smarce1O54941 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarce1O54941 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC19.2■□□□□ 0.66
Smarce1O54941 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarce1O54941 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarce1O54941 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarce1O54941 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarce1O54941 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarce1O54941 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms