Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 CALM1P1-201ENST00000442082 433 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.92□□□□□ -1.94
USP41Q3LFD5 snoU109.2-201ENST00000459316 135 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.92□□□□□ -1.94
USP41Q3LFD5 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.92□□□□□ -1.94
USP41Q3LFD5 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.92□□□□□ -1.94
USP41Q3LFD5 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.92□□□□□ -1.94
USP41Q3LFD5 AC096725.1-201ENST00000514266 313 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 CENPUP1-201ENST00000526649 1202 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 AC078814.3-201ENST00000553036 491 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 AL133241.1-201ENST00000556832 487 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 LINC00933-203ENST00000559812 219 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.92□□□□□ -1.94
USP41Q3LFD5 MIR4435-1-201ENST00000582552 80 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.92□□□□□ -1.94
USP41Q3LFD5 AC092747.3-201ENST00000603769 301 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 RBM11P1-201ENST00000604951 799 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 RNU6-89P-201ENST00000606519 100 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 Z82243.1-201ENST00000609432 473 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 AC092608.2-201ENST00000624427 218 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.92□□□□□ -1.94
USP41Q3LFD5 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.92□□□□□ -1.94
USP41Q3LFD5 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.91□□□□□ -1.94
USP41Q3LFD5 AC092435.3-201ENST00000565538 3654 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
USP41Q3LFD5 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
USP41Q3LFD5 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
USP41Q3LFD5 MIR26A1-201ENST00000362205 77 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 RNU6-384P-201ENST00000364900 104 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 RNU6-898P-201ENST00000365627 104 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 RNU6-332P-201ENST00000391193 108 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 Y_RNA.615-201ENST00000410769 117 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 RNU6-607P-201ENST00000411283 108 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 AC023141.4-201ENST00000412031 328 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.91□□□□□ -1.94
USP41Q3LFD5 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.91□□□□□ -1.94
USP41Q3LFD5 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.91□□□□□ -1.94
USP41Q3LFD5 AC233279.1-201ENST00000455300 423 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 BTF3P15-201ENST00000455606 336 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 RNU7-167P-201ENST00000459160 62 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 DYNLL1P5-201ENST00000467158 270 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.91□□□□□ -1.94
USP41Q3LFD5 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.91□□□□□ -1.94
USP41Q3LFD5 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.91□□□□□ -1.94
USP41Q3LFD5 LRRC37A5P-203ENST00000580181 585 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 AL645944.1-201ENST00000603857 493 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 AC092807.2-201ENST00000609367 243 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 MIR3199-2-201ENST00000636243 86 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
USP41Q3LFD5 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
USP41Q3LFD5 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
USP41Q3LFD5 AC008669.1-201ENST00000565823 2178 ntBASIC2.91□□□□□ -1.94
USP41Q3LFD5 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.94
USP41Q3LFD5 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.9□□□□□ -1.95
USP41Q3LFD5 Y_RNA.373-201ENST00000365600 103 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 Y_RNA.399-201ENST00000383955 105 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 MIR767-201ENST00000390228 109 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 RNU4-26P-201ENST00000410270 107 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 RNU6-373P-201ENST00000411247 98 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 POLHP1-201ENST00000411806 470 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 CYCSP33-201ENST00000414485 327 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.9□□□□□ -1.95
USP41Q3LFD5 ARL5AP1-201ENST00000418991 388 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 TOMM20P4-201ENST00000427861 435 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 AC098831.1-201ENST00000440661 216 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 NDUFB1P2-201ENST00000449477 176 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 RPS29P25-201ENST00000481709 171 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 AC011005.2-201ENST00000487324 359 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 MTCYBP18-201ENST00000501056 747 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 RNU6-189P-201ENST00000516120 101 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 RNU6-56P-201ENST00000516986 93 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 AC022634.1-201ENST00000520765 532 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.9□□□□□ -1.95
USP41Q3LFD5 OR11H5P-201ENST00000554039 926 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 AC021739.1-201ENST00000559631 174 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 AP001094.1-201ENST00000579805 193 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 VN1R80P-201ENST00000597126 338 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 AC002044.1-201ENST00000606707 158 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 AC013412.1-201ENST00000610687 192 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
USP41Q3LFD5 AC100810.6-201ENST00000638068 285 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.9□□□□□ -1.95
USP41Q3LFD5 AC108206.1-201ENST00000570186 4159 ntBASIC2.9□□□□□ -1.95
USP41Q3LFD5 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
USP41Q3LFD5 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.89□□□□□ -1.95
USP41Q3LFD5 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
USP41Q3LFD5 RNU1-105P-201ENST00000363470 161 ntBASIC2.89□□□□□ -1.95
USP41Q3LFD5 RNA5SP68-201ENST00000363885 119 ntBASIC2.89□□□□□ -1.95
USP41Q3LFD5 RNA5SP354-201ENST00000391247 136 ntBASIC2.89□□□□□ -1.95
USP41Q3LFD5 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.89□□□□□ -1.95
USP41Q3LFD5 RNU2-3P-201ENST00000410144 191 ntBASIC2.89□□□□□ -1.95
USP41Q3LFD5 AC016831.2-201ENST00000417179 352 ntBASIC2.89□□□□□ -1.95
USP41Q3LFD5 AL365496.1-201ENST00000426885 215 ntBASIC2.89□□□□□ -1.95
USP41Q3LFD5 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.89□□□□□ -1.95
USP41Q3LFD5 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.89□□□□□ -1.95
USP41Q3LFD5 RPL32P28-201ENST00000443577 397 ntBASIC2.89□□□□□ -1.95
USP41Q3LFD5 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.89□□□□□ -1.95
USP41Q3LFD5 HMGN2P10-201ENST00000448085 265 ntBASIC2.89□□□□□ -1.95
USP41Q3LFD5 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 141.8 ms