Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.99□□□□□ -1.93
SHMT1P34896 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.99□□□□□ -1.93
SHMT1P34896 CCDC34P1-201ENST00000507441 517 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.99□□□□□ -1.93
SHMT1P34896 AC010486.1-201ENST00000511793 424 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 AC074344.1-201ENST00000512823 224 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 RNU2-69P-201ENST00000516061 100 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
SHMT1P34896 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.99□□□□□ -1.93
SHMT1P34896 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.99□□□□□ -1.93
SHMT1P34896 CENPUP1-201ENST00000526649 1202 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.99□□□□□ -1.93
SHMT1P34896 AC078814.3-201ENST00000553036 491 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 MIR4782-201ENST00000577987 79 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.99□□□□□ -1.93
SHMT1P34896 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.99□□□□□ -1.93
SHMT1P34896 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.99□□□□□ -1.93
SHMT1P34896 AL645944.1-201ENST00000603857 493 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 AC004852.3-201ENST00000614131 326 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 U4.3-201ENST00000621047 82 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 AP003400.5-201ENST00000624827 617 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 CTSLP2-204ENST00000629029 392 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.99□□□□□ -1.93
SHMT1P34896 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
SHMT1P34896 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.99□□□□□ -1.93
SHMT1P34896 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
SHMT1P34896 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.98□□□□□ -1.93
SHMT1P34896 RNU6-1283P-201ENST00000365314 105 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.98□□□□□ -1.93
SHMT1P34896 SNORA75B-201ENST00000384053 137 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 Y_RNA.480-201ENST00000384364 102 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 RNU4-26P-201ENST00000410270 107 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.98□□□□□ -1.93
SHMT1P34896 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.98□□□□□ -1.93
SHMT1P34896 ATG3P1-201ENST00000419507 911 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 AL627311.1-201ENST00000431514 115 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.98□□□□□ -1.93
SHMT1P34896 WASF1P1-201ENST00000447560 1131 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.98□□□□□ -1.93
SHMT1P34896 RNU7-167P-201ENST00000459160 62 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 RN7SL499P-201ENST00000481141 276 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 AC069439.1-201ENST00000494739 167 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 Y_RNA.654-201ENST00000497848 106 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.98□□□□□ -1.93
SHMT1P34896 MTND3P25-201ENST00000509243 135 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 AF235103.2-201ENST00000525753 346 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 OR11H5P-201ENST00000554039 926 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 DNAJC8P1-201ENST00000554535 372 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.98□□□□□ -1.93
SHMT1P34896 AC073539.2-201ENST00000597113 165 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 MTND4LP5-201ENST00000605152 292 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 AC107871.2-201ENST00000612894 502 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 AL590808.1-201ENST00000618696 141 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
SHMT1P34896 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
SHMT1P34896 MAPK10-322ENST00000641485 4530 ntBASIC2.98□□□□□ -1.93
SHMT1P34896 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.97□□□□□ -1.93
SHMT1P34896 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.97□□□□□ -1.93
SHMT1P34896 RNU6-1027P-201ENST00000383998 107 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 RNU6-166P-201ENST00000384371 107 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 RNU6-658P-201ENST00000384606 106 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 RNU6-332P-201ENST00000391193 108 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 AL356057.2-201ENST00000403318 432 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 RPS4XP7-201ENST00000406274 780 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.97□□□□□ -1.93
SHMT1P34896 Y_RNA.623-201ENST00000411128 95 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 RNU6-607P-201ENST00000411283 108 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 RNA5SP508-201ENST00000411327 119 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 BX682237.1-201ENST00000415016 335 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.97□□□□□ -1.93
SHMT1P34896 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.97□□□□□ -1.93
SHMT1P34896 AL583843.1-201ENST00000456070 346 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.97□□□□□ -1.93
SHMT1P34896 RNU6-1208P-201ENST00000459588 107 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.97□□□□□ -1.93
SHMT1P34896 RPS27AP10-201ENST00000496103 208 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 AC114786.4-201ENST00000508771 728 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.97□□□□□ -1.93
SHMT1P34896 AC008413.1-201ENST00000511864 177 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 MIR892C-201ENST00000516410 77 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.97□□□□□ -1.93
SHMT1P34896 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.97□□□□□ -1.93
SHMT1P34896 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.97□□□□□ -1.93
SHMT1P34896 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.97□□□□□ -1.93
SHMT1P34896 AC010620.2-201ENST00000600135 313 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 AL031601.2-202ENST00000622650 282 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.97□□□□□ -1.93
SHMT1P34896 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.97□□□□□ -1.93
SHMT1P34896 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.97□□□□□ -1.93
SHMT1P34896 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.97□□□□□ -1.93
SHMT1P34896 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.97□□□□□ -1.93
SHMT1P34896 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
SHMT1P34896 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.96□□□□□ -1.94
SHMT1P34896 RNA5SP210-201ENST00000391034 120 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 FGF7P8-201ENST00000402994 292 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 POLHP1-201ENST00000411806 470 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.96□□□□□ -1.94
SHMT1P34896 RPL21P93-201ENST00000480465 489 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 RPS29P20-201ENST00000489592 171 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 141.7 ms