Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
CCDC88BA6NC98 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
CCDC88BA6NC98 MAL2-206ENST00000522187 547 ntTSL 4 BASIC0.19□□□□□ -2.38
CCDC88BA6NC98 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.19□□□□□ -2.38
CCDC88BA6NC98 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.19□□□□□ -2.38
CCDC88BA6NC98 BBIP1P1-201ENST00000602999 279 ntBASIC0.19□□□□□ -2.38
CCDC88BA6NC98 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.19□□□□□ -2.38
CCDC88BA6NC98 AC018926.3-201ENST00000618841 406 ntBASIC0.19□□□□□ -2.38
CCDC88BA6NC98 RNU6-217P-201ENST00000384164 104 ntBASIC0.18□□□□□ -2.38
CCDC88BA6NC98 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC0.18□□□□□ -2.38
CCDC88BA6NC98 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC0.18□□□□□ -2.38
CCDC88BA6NC98 RSL24D1P8-201ENST00000434442 492 ntBASIC0.18□□□□□ -2.38
CCDC88BA6NC98 AC013267.1-201ENST00000458227 267 ntBASIC0.18□□□□□ -2.38
CCDC88BA6NC98 HMGN1P13-201ENST00000505795 138 ntBASIC0.18□□□□□ -2.38
CCDC88BA6NC98 AC022616.8-201ENST00000533569 253 ntBASIC0.18□□□□□ -2.38
CCDC88BA6NC98 MIR4305-201ENST00000583252 102 ntBASIC0.18□□□□□ -2.38
CCDC88BA6NC98 AC092125.1-201ENST00000562568 1995 ntBASIC0.18□□□□□ -2.38
CCDC88BA6NC98 RNA5SP361-201ENST00000362686 118 ntBASIC0.17□□□□□ -2.38
CCDC88BA6NC98 AL591034.2-201ENST00000402839 359 ntBASIC0.17□□□□□ -2.38
CCDC88BA6NC98 AL355615.1-201ENST00000406187 641 ntBASIC0.17□□□□□ -2.38
CCDC88BA6NC98 AL139098.1-201ENST00000407291 389 ntBASIC0.17□□□□□ -2.38
CCDC88BA6NC98 AC078974.1-201ENST00000411597 223 ntBASIC0.17□□□□□ -2.38
CCDC88BA6NC98 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC0.17□□□□□ -2.38
CCDC88BA6NC98 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.17□□□□□ -2.38
CCDC88BA6NC98 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC0.17□□□□□ -2.38
CCDC88BA6NC98 MIR4667-201ENST00000578933 66 ntBASIC0.17□□□□□ -2.38
CCDC88BA6NC98 MZT1P2-201ENST00000604387 248 ntBASIC0.17□□□□□ -2.38
CCDC88BA6NC98 AC090578.1-201ENST00000604955 591 ntBASIC0.17□□□□□ -2.38
CCDC88BA6NC98 AC091965.5-201ENST00000624785 342 ntBASIC0.17□□□□□ -2.38
CCDC88BA6NC98 MIR95-201ENST00000385072 81 ntBASIC0.16□□□□□ -2.38
CCDC88BA6NC98 EIF1P1-201ENST00000421436 341 ntBASIC0.16□□□□□ -2.38
CCDC88BA6NC98 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC0.16□□□□□ -2.38
CCDC88BA6NC98 AC010631.1-201ENST00000474150 156 ntBASIC0.16□□□□□ -2.38
CCDC88BA6NC98 RPL21P47-201ENST00000483696 477 ntBASIC0.16□□□□□ -2.38
CCDC88BA6NC98 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC0.16□□□□□ -2.38
CCDC88BA6NC98 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.16□□□□□ -2.38
CCDC88BA6NC98 CYCSP27-201ENST00000527643 293 ntBASIC0.16□□□□□ -2.38
CCDC88BA6NC98 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC0.16□□□□□ -2.38
CCDC88BA6NC98 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.16□□□□□ -2.38
CCDC88BA6NC98 AL161729.4-201ENST00000604650 476 ntBASIC0.16□□□□□ -2.38
CCDC88BA6NC98 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.16□□□□□ -2.38
CCDC88BA6NC98 AC104692.1-201ENST00000472406 90 ntBASIC0.16□□□□□ -2.38
CCDC88BA6NC98 PDCD5P2-201ENST00000507570 312 ntBASIC0.16□□□□□ -2.38
CCDC88BA6NC98 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC0.16□□□□□ -2.38
CCDC88BA6NC98 AC022616.2-201ENST00000523185 300 ntBASIC0.16□□□□□ -2.38
CCDC88BA6NC98 HSPA8P13-201ENST00000523715 472 ntBASIC0.16□□□□□ -2.38
CCDC88BA6NC98 AC009268.1-201ENST00000561352 1203 ntBASIC0.16□□□□□ -2.38
CCDC88BA6NC98 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.16□□□□□ -2.38
CCDC88BA6NC98 AP005229.2-201ENST00000609980 697 ntBASIC0.16□□□□□ -2.38
CCDC88BA6NC98 AC104465.1-201ENST00000611365 139 ntBASIC0.16□□□□□ -2.38
CCDC88BA6NC98 Z75746.1-201ENST00000440243 2080 ntBASIC0.15□□□□□ -2.38
CCDC88BA6NC98 AC245060.5-201ENST00000610778 3293 ntBASIC0.15□□□□□ -2.39
CCDC88BA6NC98 RNU6-441P-201ENST00000384545 106 ntBASIC0.15□□□□□ -2.39
CCDC88BA6NC98 RNU2-7P-201ENST00000410794 178 ntBASIC0.15□□□□□ -2.39
CCDC88BA6NC98 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.15□□□□□ -2.39
CCDC88BA6NC98 BPY2DP-201ENST00000422208 265 ntBASIC0.15□□□□□ -2.39
CCDC88BA6NC98 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC0.15□□□□□ -2.39
CCDC88BA6NC98 AC010409.1-201ENST00000487382 476 ntBASIC0.15□□□□□ -2.39
CCDC88BA6NC98 RNU6-27P-201ENST00000516146 107 ntBASIC0.15□□□□□ -2.39
CCDC88BA6NC98 RNVU1-2-201ENST00000516326 135 ntBASIC0.15□□□□□ -2.39
CCDC88BA6NC98 AC136619.2-201ENST00000563361 631 ntBASIC0.15□□□□□ -2.39
CCDC88BA6NC98 RPL30P11-203ENST00000598995 310 ntBASIC0.15□□□□□ -2.39
CCDC88BA6NC98 BNIP3P23-201ENST00000599655 511 ntBASIC0.15□□□□□ -2.39
CCDC88BA6NC98 AL713866.2-201ENST00000603579 219 ntBASIC0.15□□□□□ -2.39
CCDC88BA6NC98 AC017083.3-201ENST00000609955 700 ntBASIC0.15□□□□□ -2.39
CCDC88BA6NC98 FTX_3.1-201ENST00000610451 147 ntBASIC0.15□□□□□ -2.39
CCDC88BA6NC98 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
CCDC88BA6NC98 MTND4P14-201ENST00000435799 1354 ntBASIC0.14□□□□□ -2.39
CCDC88BA6NC98 FARSBP1-201ENST00000435808 1778 ntBASIC0.14□□□□□ -2.39
CCDC88BA6NC98 RNU5A-1-201ENST00000362698 116 ntBASIC0.14□□□□□ -2.39
CCDC88BA6NC98 RNU6-31P-201ENST00000384388 108 ntBASIC0.14□□□□□ -2.39
CCDC88BA6NC98 RNU6-140P-201ENST00000384566 108 ntBASIC0.14□□□□□ -2.39
CCDC88BA6NC98 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.14□□□□□ -2.39
CCDC88BA6NC98 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.14□□□□□ -2.39
CCDC88BA6NC98 AC074344.1-201ENST00000512823 224 ntBASIC0.14□□□□□ -2.39
CCDC88BA6NC98 RNU6-1256P-201ENST00000516539 103 ntBASIC0.14□□□□□ -2.39
CCDC88BA6NC98 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC0.14□□□□□ -2.39
CCDC88BA6NC98 AP003072.5-201ENST00000623872 773 ntBASIC0.14□□□□□ -2.39
CCDC88BA6NC98 MIR302D-201ENST00000362275 68 ntBASIC0.13□□□□□ -2.39
CCDC88BA6NC98 RPS3AP36-201ENST00000398190 775 ntBASIC0.13□□□□□ -2.39
CCDC88BA6NC98 MIR1262-201ENST00000408276 93 ntBASIC0.13□□□□□ -2.39
CCDC88BA6NC98 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC0.13□□□□□ -2.39
CCDC88BA6NC98 AL161935.2-201ENST00000414627 60 ntBASIC0.13□□□□□ -2.39
CCDC88BA6NC98 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC0.13□□□□□ -2.39
CCDC88BA6NC98 AC104073.1-201ENST00000451988 151 ntBASIC0.13□□□□□ -2.39
CCDC88BA6NC98 snoU13.19-201ENST00000459148 104 ntBASIC0.13□□□□□ -2.39
CCDC88BA6NC98 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.13□□□□□ -2.39
CCDC88BA6NC98 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC0.13□□□□□ -2.39
CCDC88BA6NC98 COPS8P3-201ENST00000526024 482 ntBASIC0.13□□□□□ -2.39
CCDC88BA6NC98 AC068790.6-201ENST00000602558 258 ntBASIC0.13□□□□□ -2.39
CCDC88BA6NC98 UBE2Q2P6-201ENST00000612666 153 ntBASIC0.13□□□□□ -2.39
CCDC88BA6NC98 AC040896.1-201ENST00000613819 479 ntBASIC0.13□□□□□ -2.39
CCDC88BA6NC98 Pinc.1-201ENST00000616452 154 ntBASIC0.13□□□□□ -2.39
CCDC88BA6NC98 MIR6134-201ENST00000617606 109 ntBASIC0.13□□□□□ -2.39
CCDC88BA6NC98 RNU6-1065P-201ENST00000384513 106 ntBASIC0.12□□□□□ -2.39
CCDC88BA6NC98 MTND2P9-201ENST00000422293 931 ntBASIC0.12□□□□□ -2.39
CCDC88BA6NC98 MTCO2P12-201ENST00000427426 682 ntBASIC0.12□□□□□ -2.39
CCDC88BA6NC98 AC244505.3-201ENST00000454598 187 ntBASIC0.12□□□□□ -2.39
CCDC88BA6NC98 RPL36AP48-201ENST00000485521 314 ntBASIC0.12□□□□□ -2.39
CCDC88BA6NC98 RNU6-667P-201ENST00000517186 102 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms