Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.48□□□□□ -1.85
DKK3Q9UBP4 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.48□□□□□ -1.85
DKK3Q9UBP4 AL512643.1-201ENST00000635735 524 ntBASIC3.48□□□□□ -1.85
DKK3Q9UBP4 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.48□□□□□ -1.85
DKK3Q9UBP4 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.48□□□□□ -1.85
DKK3Q9UBP4 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
DKK3Q9UBP4 MTND5P19-201ENST00000424872 1794 ntBASIC3.48□□□□□ -1.85
DKK3Q9UBP4 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.48□□□□□ -1.85
DKK3Q9UBP4 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.47□□□□□ -1.85
DKK3Q9UBP4 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.47□□□□□ -1.85
DKK3Q9UBP4 KPNA2P1-201ENST00000458289 1591 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
DKK3Q9UBP4 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
DKK3Q9UBP4 RNU6-512P-201ENST00000364438 103 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 RNU6-1303P-201ENST00000364841 107 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 RNU6-310P-201ENST00000384655 107 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 SNORA48.2-201ENST00000390926 124 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 RNU2-3P-201ENST00000410144 191 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 RN7SKP284-201ENST00000411002 343 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.47□□□□□ -1.85
DKK3Q9UBP4 AL357552.1-201ENST00000445254 415 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 FABP5P15-201ENST00000453566 214 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 RPL30P15-201ENST00000457129 321 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 AC093663.1-201ENST00000497190 394 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 MTND3P25-201ENST00000509243 135 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 RNA5SP385-201ENST00000515947 110 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 RNU1-54P-201ENST00000517181 120 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 IGKV2-26-201ENST00000518305 343 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.47□□□□□ -1.85
DKK3Q9UBP4 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.47□□□□□ -1.85
DKK3Q9UBP4 AC010653.1-201ENST00000571108 881 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 AP000654.2-201ENST00000605633 586 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.47□□□□□ -1.85
DKK3Q9UBP4 MIR6128-201ENST00000615528 109 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 AC090132.2-201ENST00000615881 347 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 RMST_4.1-201ENST00000616886 107 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
DKK3Q9UBP4 AL669831.3-213ENST00000636676 183 ntBASIC3.47□□□□□ -1.85
DKK3Q9UBP4 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
DKK3Q9UBP4 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.47□□□□□ -1.85
DKK3Q9UBP4 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
DKK3Q9UBP4 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
DKK3Q9UBP4 SNORD62.1-201ENST00000362541 86 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 Y_RNA.28-201ENST00000362554 111 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 Y_RNA.216-201ENST00000364205 93 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 RNU6-395P-201ENST00000365662 106 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
DKK3Q9UBP4 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 CYCSP33-201ENST00000414485 327 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 PMCHL1-202ENST00000423102 261 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AL590632.1-201ENST00000424289 371 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AC009969.1-201ENST00000438726 172 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AC125238.1-201ENST00000448842 249 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AC008155.2-201ENST00000464337 397 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AL160314.1-201ENST00000490836 438 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 HMGB1P30-201ENST00000492455 606 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AC022493.1-201ENST00000492984 337 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 FCF1P8-201ENST00000510322 597 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AC092436.3-201ENST00000511788 257 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AC026782.1-201ENST00000512952 449 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 SMURF2P1-201ENST00000514992 481 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 RNU6-976P-201ENST00000516086 111 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 Y_RNA.708-201ENST00000516950 96 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AP003122.3-201ENST00000526316 255 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AC084851.1-201ENST00000529105 249 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AC004024.1-201ENST00000549244 247 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AL157871.3-201ENST00000557231 293 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 TGIF1P1-201ENST00000558095 802 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AP001836.1-201ENST00000604675 523 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AC018462.2-201ENST00000605375 395 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AC022149.2-201ENST00000621061 203 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
DKK3Q9UBP4 AL513302.2-201ENST00000562313 1842 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
DKK3Q9UBP4 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.46□□□□□ -1.86
DKK3Q9UBP4 MTND5P7-201ENST00000413558 1798 ntBASIC3.46□□□□□ -1.86
DKK3Q9UBP4 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
DKK3Q9UBP4 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
DKK3Q9UBP4 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
DKK3Q9UBP4 RNU6-1329P-201ENST00000365664 107 ntBASIC3.45□□□□□ -1.86
DKK3Q9UBP4 MIR128-1-201ENST00000384921 82 ntBASIC3.45□□□□□ -1.86
DKK3Q9UBP4 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
DKK3Q9UBP4 RNU6-1050P-201ENST00000410388 107 ntBASIC3.45□□□□□ -1.86
DKK3Q9UBP4 Y_RNA.646-201ENST00000410980 101 ntBASIC3.45□□□□□ -1.86
DKK3Q9UBP4 RNU6-293P-201ENST00000411259 106 ntBASIC3.45□□□□□ -1.86
DKK3Q9UBP4 SNORD5.1-201ENST00000458800 75 ntBASIC3.45□□□□□ -1.86
DKK3Q9UBP4 RN7SL442P-201ENST00000473804 320 ntBASIC3.45□□□□□ -1.86
DKK3Q9UBP4 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.45□□□□□ -1.86
DKK3Q9UBP4 SNORA70.16-201ENST00000516390 95 ntBASIC3.45□□□□□ -1.86
DKK3Q9UBP4 SNORA70.19-201ENST00000516717 90 ntBASIC3.45□□□□□ -1.86
DKK3Q9UBP4 NDUFB9P3-201ENST00000521269 501 ntBASIC3.45□□□□□ -1.86
DKK3Q9UBP4 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.45□□□□□ -1.86
DKK3Q9UBP4 AC025423.5-201ENST00000550230 219 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms