Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL031779.1-201ENST00000415663 330 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 RNA5SP269-201ENST00000459032 137 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 AC098862.1-201ENST00000504991 413 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 RNA5SP320-201ENST00000516263 124 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 SNORA31.11-201ENST00000516528 139 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 MIR514B-201ENST00000516774 80 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 SNORA31.23-201ENST00000517219 133 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 AC090572.1-201ENST00000519251 160 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 ELOCP31-201ENST00000540463 467 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 AC098848.2-201ENST00000588023 330 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 AC090578.1-201ENST00000604955 591 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 SNORA41-201ENST00000384675 132 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 HMGN2P39-201ENST00000398005 273 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 AL049545.1-201ENST00000401856 572 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 OR6C66P-201ENST00000414917 930 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 AC104850.1-201ENST00000435940 476 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 DNAJC19P4-201ENST00000440115 345 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 RAP1BP2-201ENST00000478270 544 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 SCARNA24.1-201ENST00000516465 137 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 MTCYBP20-201ENST00000524239 1129 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 AC093249.1-201ENST00000567049 203 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 MIR4435-1-201ENST00000582552 80 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 AC005034.5-201ENST00000604219 466 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 AC104237.2-201ENST00000612456 443 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 AC243829.7-201ENST00000633081 225 ntBASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHMP4AQ9BY43 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 FGF7P2-201ENST00000332473 296 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 RNU6-1159P-201ENST00000362933 107 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 SNORA67.4-201ENST00000384688 142 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 AL512604.1-201ENST00000404812 257 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 BTF3L4P1-201ENST00000413813 468 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 AC107081.1-201ENST00000414975 361 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 MTND2P18-201ENST00000419962 1030 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 AL137159.1-201ENST00000452808 512 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 snoU109.2-201ENST00000459316 135 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 SNORD42A-201ENST00000459584 64 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 GMFBP1-201ENST00000467831 427 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 AL121594.1-201ENST00000475906 575 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 AC018630.3-201ENST00000542637 96 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 AC025678.1-201ENST00000567861 338 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 AC060766.3-201ENST00000591442 263 ntBASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.18□□□□□ -1.9
CHMP4AQ9BY43 MIR449A-201ENST00000362113 91 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 RNU4-82P-201ENST00000362443 140 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 RNY4P34-201ENST00000364779 95 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 RNU6-611P-201ENST00000384276 104 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 MIR518C-201ENST00000384822 101 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 MIR454-201ENST00000390180 115 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 RNA5SP210-201ENST00000391034 120 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 RPL21P90-201ENST00000415692 466 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 CYCSP46-201ENST00000423569 204 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 AC092447.3-201ENST00000426027 686 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 MTATP6P16-201ENST00000434543 526 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 AC009961.2-201ENST00000435771 251 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 RNU7-182P-201ENST00000459009 62 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 AP001025.1-201ENST00000486139 332 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 RPS27P21-201ENST00000486977 252 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 AC104806.1-201ENST00000508720 308 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 AC117532.1-201ENST00000514638 323 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 AC115990.1-201ENST00000526957 301 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 AP000763.2-201ENST00000540641 163 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 AL158211.1-201ENST00000566763 763 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 MTCYBP33-201ENST00000575007 1130 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 LRRC37A5P-203ENST00000580181 585 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 MIR3941-201ENST00000582572 103 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 MIR3670-2-201ENST00000582974 65 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 MIR3670-1-201ENST00000584160 65 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 MIR3670-3-201ENST00000584855 65 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 AL136363.2-201ENST00000604173 851 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 ELOCP5-201ENST00000604924 333 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 AC006566.1-201ENST00000608943 513 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 MIR3670-4-201ENST00000612260 65 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 IGHVIII-44-202ENST00000636235 289 ntBASIC3.17□□□□□ -1.9
CHMP4AQ9BY43 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms