Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SNORA25.17-201ENST00000517184 124 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 AL121821.2-201ENST00000556081 394 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 AC234778.2-201ENST00000566241 354 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 SNORA59B-202ENST00000578183 701 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 VN1R80P-201ENST00000597126 338 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 CTHRC1P1-201ENST00000605383 469 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 RMST_4.1-201ENST00000616886 107 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 MIR6134-201ENST00000617606 109 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 AL137790.1-201ENST00000634283 177 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 AC000403.1-201ENST00000613696 3585 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.47□□□□□ -2.01
NKX3-1Q99801 ADAM3A-203ENST00000461344 2157 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 AC008669.1-201ENST00000565823 2178 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 RNU6-7-201ENST00000364784 107 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 RNU1-140P-201ENST00000365040 165 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 Y_RNA.324-201ENST00000365165 102 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 RNU6-8-201ENST00000365467 107 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 UBA52P6-201ENST00000399822 382 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 RNU6-1148P-201ENST00000410992 104 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.47□□□□□ -2.01
NKX3-1Q99801 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.47□□□□□ -2.01
NKX3-1Q99801 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.47□□□□□ -2.01
NKX3-1Q99801 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.47□□□□□ -2.01
NKX3-1Q99801 MRPL50P4-201ENST00000446432 475 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.47□□□□□ -2.01
NKX3-1Q99801 AC117503.1-201ENST00000472241 394 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 Y_RNA.665-201ENST00000516177 98 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 Y_RNA.687-201ENST00000516558 91 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 AC022634.1-201ENST00000520765 532 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 NACAP3-201ENST00000552100 481 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.47□□□□□ -2.01
NKX3-1Q99801 AC023043.3-201ENST00000593113 385 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 AC092747.3-201ENST00000603769 301 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 AP000787.2-201ENST00000604432 568 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 AC123912.5-201ENST00000605470 343 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 AL121757.2-201ENST00000611223 313 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 U2.17-201ENST00000611454 95 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 AC004852.3-201ENST00000614131 326 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 AC090617.10-201ENST00000624308 134 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 MIR3199-2-201ENST00000636243 86 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 AC100810.6-201ENST00000638068 285 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.47□□□□□ -2.01
NKX3-1Q99801 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.47□□□□□ -2.01
NKX3-1Q99801 AL035425.3-201ENST00000564206 4996 ntBASIC2.47□□□□□ -2.01
NKX3-1Q99801 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.46□□□□□ -2.02
NKX3-1Q99801 AC138393.1-203ENST00000327086 343 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 RNU6-266P-201ENST00000364225 107 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
NKX3-1Q99801 Y_RNA.390-201ENST00000383932 102 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 RNU6-72P-201ENST00000384285 79 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 MIR512-1-201ENST00000384913 84 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
NKX3-1Q99801 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.46□□□□□ -2.02
NKX3-1Q99801 RPL7P37-201ENST00000425095 738 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.46□□□□□ -2.02
NKX3-1Q99801 CALM1P1-201ENST00000442082 433 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 AL590639.1-201ENST00000456484 337 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 RNU6-1208P-201ENST00000459588 107 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 AC128713.1-201ENST00000471495 306 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 AC103975.1-201ENST00000482506 483 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 HMGB1P30-201ENST00000492455 606 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 AC091885.1-201ENST00000506658 268 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 AC116655.1-201ENST00000508324 901 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.46□□□□□ -2.02
NKX3-1Q99801 AC091826.1-201ENST00000514065 313 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.46□□□□□ -2.02
NKX3-1Q99801 AC023050.3-201ENST00000541142 333 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 AC107016.2-201ENST00000547968 190 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.46□□□□□ -2.02
NKX3-1Q99801 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.46□□□□□ -2.02
NKX3-1Q99801 AC008739.2-201ENST00000597006 317 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 Z82243.1-201ENST00000609432 473 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 AC138627.2-201ENST00000624202 601 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 SCARNA15.3-201ENST00000626315 122 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 SCARNA4.1-201ENST00000628597 123 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 AC092593.1-201ENST00000515413 1815 ntBASIC2.46□□□□□ -2.02
NKX3-1Q99801 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
NKX3-1Q99801 CDC27P3-201ENST00000635418 1910 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-37P-201ENST00000362692 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-11P-201ENST00000364234 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU1-100P-201ENST00000365255 165 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-25P-201ENST00000383873 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-1-201ENST00000383898 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-48P-201ENST00000384161 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-36P-201ENST00000384172 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-4P-201ENST00000384205 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-5P-201ENST00000384238 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-3P-201ENST00000384314 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-16P-201ENST00000384385 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-15P-201ENST00000384534 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-2-201ENST00000384627 107 ntBASIC2.45□□□□□ -2.02
NKX3-1Q99801 RNU6-29P-201ENST00000384637 107 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms