Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
NUP88Q99567 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.64□□□□□ -1.83
NUP88Q99567 AL121821.2-201ENST00000556081 394 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.64□□□□□ -1.83
NUP88Q99567 AC091135.1-201ENST00000585943 307 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
NUP88Q99567 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 AC091903.1-201ENST00000624322 454 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 SCARNA4-202ENST00000625402 129 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
NUP88Q99567 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
NUP88Q99567 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
NUP88Q99567 Y_RNA.111-201ENST00000363248 100 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 Y_RNA.166-201ENST00000363730 102 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 SNORA14A-201ENST00000364773 135 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 RNU6-72P-201ENST00000384285 79 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 MIR767-201ENST00000390228 109 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 RNU2-49P-201ENST00000410666 184 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.63□□□□□ -1.83
NUP88Q99567 AL359672.1-201ENST00000442302 409 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 AC025750.2-201ENST00000442609 450 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 HIGD1AP2-201ENST00000446367 280 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.63□□□□□ -1.83
NUP88Q99567 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.63□□□□□ -1.83
NUP88Q99567 AC006026.2-201ENST00000457376 180 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 RPS27P29-201ENST00000463110 252 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.63□□□□□ -1.83
NUP88Q99567 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.63□□□□□ -1.83
NUP88Q99567 AC113155.1-201ENST00000511141 769 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.63□□□□□ -1.83
NUP88Q99567 RNU6-581P-201ENST00000516214 105 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 AC104576.1-201ENST00000524225 88 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.63□□□□□ -1.83
NUP88Q99567 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
NUP88Q99567 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 AC011890.2-201ENST00000613393 294 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 AC025253.1-201ENST00000613623 543 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 FAM157A-202ENST00000615155 405 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 uc_338.15-201ENST00000615470 191 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 TPTEP1-208ENST00000636884 213 ntBASIC3.63□□□□□ -1.83
NUP88Q99567 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
NUP88Q99567 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.62□□□□□ -1.83
NUP88Q99567 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
NUP88Q99567 RNU6-128P-201ENST00000383976 107 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 SNORD73A-201ENST00000386062 65 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 AL356432.1-201ENST00000405809 419 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.62□□□□□ -1.83
NUP88Q99567 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.62□□□□□ -1.83
NUP88Q99567 AL139396.1-201ENST00000421137 167 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 AC098831.1-201ENST00000440661 216 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.62□□□□□ -1.83
NUP88Q99567 AC012308.1-201ENST00000451232 178 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 AC096576.1-201ENST00000489014 359 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.62□□□□□ -1.83
NUP88Q99567 RPL39P5-202ENST00000512505 151 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 Y_RNA.682-201ENST00000516457 100 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 AC068657.1-201ENST00000520807 306 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 AP004607.1-201ENST00000524456 203 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 AC026371.1-201ENST00000551867 419 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 AC021739.1-201ENST00000559631 174 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 MIR4790-201ENST00000577799 79 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.62□□□□□ -1.83
NUP88Q99567 LARP7P3-201ENST00000579888 337 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 AC138761.3-201ENST00000579993 334 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 MIR3672-201ENST00000584290 82 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.62□□□□□ -1.83
NUP88Q99567 AC092628.2-201ENST00000622492 339 ntBASIC3.62□□□□□ -1.83
NUP88Q99567 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.62□□□□□ -1.83
NUP88Q99567 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.61□□□□□ -1.83
NUP88Q99567 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.61□□□□□ -1.83
NUP88Q99567 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NUP88Q99567 RNU6-562P-201ENST00000362731 107 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 U3.26-201ENST00000391236 204 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 RNA5SP354-201ENST00000391247 136 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 AL445529.1-201ENST00000398713 389 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.61□□□□□ -1.83
NUP88Q99567 COTL1P1-201ENST00000422309 375 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.61□□□□□ -1.83
NUP88Q99567 HMGN2P10-201ENST00000448085 265 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.61□□□□□ -1.83
NUP88Q99567 RNA5SP217-201ENST00000515959 91 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 RNU1-143P-201ENST00000516296 146 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 SCARNA20.6-201ENST00000517251 106 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 AC022634.1-201ENST00000520765 532 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 AC006199.1-201ENST00000548728 219 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.61□□□□□ -1.83
NUP88Q99567 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.61□□□□□ -1.83
NUP88Q99567 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.61□□□□□ -1.83
NUP88Q99567 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.61□□□□□ -1.83
NUP88Q99567 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.61□□□□□ -1.83
NUP88Q99567 AL355877.2-201ENST00000603670 358 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 AC021646.1-201ENST00000605469 484 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 U1.23-201ENST00000610293 146 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 AC104237.2-201ENST00000612456 443 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 RNU1-68P-201ENST00000615382 146 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 MIR6134-201ENST00000617606 109 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 U1.39-201ENST00000621562 146 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 Z69720.2-201ENST00000624755 279 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 146.6 ms