Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 KPNA2P1-201ENST00000458289 1591 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 SNORA60-201ENST00000362396 134 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 RNA5SP509-201ENST00000364577 119 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 Y_RNA.431-201ENST00000384086 102 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 RNY4P36-201ENST00000391116 96 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 BTF3L4P2-201ENST00000392798 346 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 Y_RNA.594-201ENST00000410373 140 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 ELOCP19-201ENST00000411919 318 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 Z82205.1-201ENST00000428456 297 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 MTND3P9-201ENST00000429526 346 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AC008571.1-201ENST00000467232 300 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AC011276.1-201ENST00000469688 323 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AC002456.2-201ENST00000509356 380 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 MIR4277-201ENST00000578298 84 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AC011494.1-201ENST00000596454 237 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AC078795.3-201ENST00000602913 472 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AP000654.2-201ENST00000605633 586 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AC009229.3-201ENST00000608056 282 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AC126177.8-201ENST00000618339 1015 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 MTND4LP32-201ENST00000636111 270 ntBASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
CCDC28AQ8IWP9 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AP003122.5-201ENST00000527668 3766 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 RNU6-1188P-201ENST00000363795 107 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 RNU1-32P-201ENST00000363937 159 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 RNU1-140P-201ENST00000365040 165 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 RNU6-596P-201ENST00000365395 98 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 U8.8-201ENST00000365399 135 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 Y_RNA.460-201ENST00000384255 102 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 RNU6-692P-201ENST00000384496 107 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 SNORD116-29-201ENST00000384516 83 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 SNORA75.4-201ENST00000391278 119 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 RPS20P15-201ENST00000412792 311 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AL139281.1-201ENST00000422120 335 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC091286.1-201ENST00000431233 461 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 FTH1P25-201ENST00000447665 469 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AP001324.2-201ENST00000461163 319 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 RPS29P27-201ENST00000463711 170 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 RPL31P41-201ENST00000477967 372 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 RN7SL499P-201ENST00000481141 276 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC008958.1-201ENST00000511047 682 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 Y_RNA.670-201ENST00000516255 105 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 Y_RNA.718-201ENST00000517110 102 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC009812.2-201ENST00000517657 457 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC109446.1-201ENST00000566172 220 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC025627.2-201ENST00000576220 160 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC011471.1-201ENST00000585766 187 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 RPS15AP11-201ENST00000594193 385 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC012493.2-201ENST00000595083 291 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC008739.2-201ENST00000597006 317 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AL137849.1-201ENST00000604767 169 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AL356157.2-201ENST00000605122 111 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC133104.2-201ENST00000615272 193 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 MIR7151-201ENST00000617477 60 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AC090574.1-201ENST00000623186 233 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 AL669831.3-213ENST00000636676 183 ntBASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC28AQ8IWP9 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.03□□□□□ -1.93
CCDC28AQ8IWP9 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.03□□□□□ -1.93
CCDC28AQ8IWP9 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms