Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL583843.1-201ENST00000456070 346 ntBASIC2.49□□□□□ -2.01
SOX3P41225 MTCO3P38-201ENST00000468910 766 ntBASIC2.49□□□□□ -2.01
SOX3P41225 AC128713.1-201ENST00000471495 306 ntBASIC2.49□□□□□ -2.01
SOX3P41225 UBE2DNL-203ENST00000474922 222 ntBASIC2.49□□□□□ -2.01
SOX3P41225 AC092989.1-201ENST00000481235 277 ntBASIC2.49□□□□□ -2.01
SOX3P41225 HMGB1P30-201ENST00000492455 606 ntBASIC2.49□□□□□ -2.01
SOX3P41225 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.49□□□□□ -2.01
SOX3P41225 RPL38P4-201ENST00000502376 214 ntBASIC2.49□□□□□ -2.01
SOX3P41225 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.49□□□□□ -2.01
SOX3P41225 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.49□□□□□ -2.01
SOX3P41225 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.49□□□□□ -2.01
SOX3P41225 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.49□□□□□ -2.01
SOX3P41225 AC234778.2-201ENST00000566241 354 ntBASIC2.49□□□□□ -2.01
SOX3P41225 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.49□□□□□ -2.01
SOX3P41225 MIR5583-1-201ENST00000580941 59 ntBASIC2.49□□□□□ -2.01
SOX3P41225 MIR3670-2-201ENST00000582974 65 ntBASIC2.49□□□□□ -2.01
SOX3P41225 MIR3670-1-201ENST00000584160 65 ntBASIC2.49□□□□□ -2.01
SOX3P41225 MIR3670-3-201ENST00000584855 65 ntBASIC2.49□□□□□ -2.01
SOX3P41225 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.49□□□□□ -2.01
SOX3P41225 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.49□□□□□ -2.01
SOX3P41225 AL645944.1-201ENST00000603857 493 ntBASIC2.49□□□□□ -2.01
SOX3P41225 MIR3670-4-201ENST00000612260 65 ntBASIC2.49□□□□□ -2.01
SOX3P41225 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.49□□□□□ -2.01
SOX3P41225 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
SOX3P41225 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
SOX3P41225 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
SOX3P41225 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
SOX3P41225 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.48□□□□□ -2.01
SOX3P41225 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.48□□□□□ -2.01
SOX3P41225 SNORA25.6-201ENST00000364121 118 ntBASIC2.48□□□□□ -2.01
SOX3P41225 RNU6-534P-201ENST00000364877 106 ntBASIC2.48□□□□□ -2.01
SOX3P41225 RNU4-20P-201ENST00000365601 151 ntBASIC2.48□□□□□ -2.01
SOX3P41225 MIR196B-201ENST00000384852 84 ntBASIC2.48□□□□□ -2.01
SOX3P41225 MIR34A-201ENST00000385130 110 ntBASIC2.48□□□□□ -2.01
SOX3P41225 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
SOX3P41225 SNORD37.1-201ENST00000390968 65 ntBASIC2.48□□□□□ -2.01
SOX3P41225 AL356057.3-201ENST00000402607 340 ntBASIC2.48□□□□□ -2.01
SOX3P41225 RNU2-3P-201ENST00000410144 191 ntBASIC2.48□□□□□ -2.01
SOX3P41225 CYCSP33-201ENST00000414485 327 ntBASIC2.48□□□□□ -2.01
SOX3P41225 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.48□□□□□ -2.01
SOX3P41225 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.48□□□□□ -2.01
SOX3P41225 AC236972.1-201ENST00000433225 199 ntBASIC2.48□□□□□ -2.01
SOX3P41225 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.48□□□□□ -2.01
SOX3P41225 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.48□□□□□ -2.01
SOX3P41225 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.48□□□□□ -2.01
SOX3P41225 RPS29P25-201ENST00000481709 171 ntBASIC2.48□□□□□ -2.01
SOX3P41225 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.48□□□□□ -2.01
SOX3P41225 CCDC34P1-201ENST00000507441 517 ntBASIC2.48□□□□□ -2.01
SOX3P41225 AC098799.2-201ENST00000509466 868 ntBASIC2.48□□□□□ -2.01
SOX3P41225 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.48□□□□□ -2.01
SOX3P41225 AC074344.1-201ENST00000512823 224 ntBASIC2.48□□□□□ -2.01
SOX3P41225 RNU1-86P-201ENST00000516108 154 ntBASIC2.48□□□□□ -2.01
SOX3P41225 RNU1-107P-201ENST00000516617 154 ntBASIC2.48□□□□□ -2.01
SOX3P41225 AC022634.1-201ENST00000520765 532 ntBASIC2.48□□□□□ -2.01
SOX3P41225 AP000889.1-201ENST00000530968 660 ntBASIC2.48□□□□□ -2.01
SOX3P41225 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.48□□□□□ -2.01
SOX3P41225 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.48□□□□□ -2.01
SOX3P41225 BNIP3P6-201ENST00000549284 499 ntBASIC2.48□□□□□ -2.01
SOX3P41225 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
SOX3P41225 AC021739.1-201ENST00000559631 174 ntBASIC2.48□□□□□ -2.01
SOX3P41225 LRRC37A5P-203ENST00000580181 585 ntBASIC2.48□□□□□ -2.01
SOX3P41225 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.48□□□□□ -2.01
SOX3P41225 MIR4672-201ENST00000583126 81 ntBASIC2.48□□□□□ -2.01
SOX3P41225 RPL12P50-201ENST00000603116 116 ntBASIC2.48□□□□□ -2.01
SOX3P41225 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
SOX3P41225 RMST_4.1-201ENST00000616886 107 ntBASIC2.48□□□□□ -2.01
SOX3P41225 AC002553.4-201ENST00000616896 331 ntBASIC2.48□□□□□ -2.01
SOX3P41225 MIR6134-201ENST00000617606 109 ntBASIC2.48□□□□□ -2.01
SOX3P41225 AC022418.1-201ENST00000624118 445 ntBASIC2.48□□□□□ -2.01
SOX3P41225 AP003400.5-201ENST00000624827 617 ntBASIC2.48□□□□□ -2.01
SOX3P41225 AC024614.3-201ENST00000637860 256 ntBASIC2.48□□□□□ -2.01
SOX3P41225 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.48□□□□□ -2.01
SOX3P41225 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.47□□□□□ -2.01
SOX3P41225 RNU1-105P-201ENST00000363470 161 ntBASIC2.47□□□□□ -2.01
SOX3P41225 RNU6-82P-201ENST00000363970 107 ntBASIC2.47□□□□□ -2.01
SOX3P41225 SNORD14B-201ENST00000364533 90 ntBASIC2.47□□□□□ -2.01
SOX3P41225 RNU6-384P-201ENST00000364900 104 ntBASIC2.47□□□□□ -2.01
SOX3P41225 Y_RNA.295-201ENST00000364918 102 ntBASIC2.47□□□□□ -2.01
SOX3P41225 RNU4-66P-201ENST00000365199 138 ntBASIC2.47□□□□□ -2.01
SOX3P41225 DEFA7P-201ENST00000382676 285 ntBASIC2.47□□□□□ -2.01
SOX3P41225 SNORD21-201ENST00000383953 95 ntBASIC2.47□□□□□ -2.01
SOX3P41225 Y_RNA.500-201ENST00000384466 111 ntBASIC2.47□□□□□ -2.01
SOX3P41225 MIR518D-201ENST00000385014 87 ntBASIC2.47□□□□□ -2.01
SOX3P41225 MIR514A2-201ENST00000385131 88 ntBASIC2.47□□□□□ -2.01
SOX3P41225 MIR514A3-201ENST00000385132 88 ntBASIC2.47□□□□□ -2.01
SOX3P41225 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.47□□□□□ -2.01
SOX3P41225 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.47□□□□□ -2.01
SOX3P41225 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.47□□□□□ -2.01
SOX3P41225 RPS15AP5-201ENST00000436276 388 ntBASIC2.47□□□□□ -2.01
SOX3P41225 PRPS1P1-201ENST00000445305 876 ntBASIC2.47□□□□□ -2.01
SOX3P41225 WASF1P1-201ENST00000447560 1131 ntBASIC2.47□□□□□ -2.01
SOX3P41225 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.47□□□□□ -2.01
SOX3P41225 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.47□□□□□ -2.01
SOX3P41225 AC011005.2-201ENST00000487324 359 ntBASIC2.47□□□□□ -2.01
SOX3P41225 FAM92A1P2-202ENST00000504766 877 ntBASIC2.47□□□□□ -2.01
SOX3P41225 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.47□□□□□ -2.01
SOX3P41225 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.47□□□□□ -2.01
SOX3P41225 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.47□□□□□ -2.01
SOX3P41225 MIR892C-201ENST00000516410 77 ntBASIC2.47□□□□□ -2.01
SOX3P41225 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 160.7 ms