Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MIR1305-201ENST00000408300 86 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AL359704.1-201ENST00000411586 781 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AC078974.1-201ENST00000411597 223 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC1.4□□□□□ -2.18
COL5A3P25940 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC1.4□□□□□ -2.18
COL5A3P25940 CCDC58P2-201ENST00000417131 366 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 USP9YP26-201ENST00000421008 661 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 Z99497.1-201ENST00000421282 135 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AC019178.2-201ENST00000423595 505 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 RPL7L1P10-201ENST00000427790 463 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 RPL7P34-201ENST00000433316 712 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC1.4□□□□□ -2.18
COL5A3P25940 RPL26P6-201ENST00000440913 438 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 MTND5P2-201ENST00000442927 1142 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AC108059.3-201ENST00000456388 214 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.4□□□□□ -2.18
COL5A3P25940 RPS20P20-201ENST00000460498 340 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AL049714.1-201ENST00000466686 347 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.4□□□□□ -2.18
COL5A3P25940 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC1.4□□□□□ -2.18
COL5A3P25940 RNU6-759P-201ENST00000516740 103 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 RNU2-44P-201ENST00000516795 194 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 SNORA31.22-201ENST00000517204 135 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 MAL2-206ENST00000522187 547 ntTSL 4 BASIC1.4□□□□□ -2.18
COL5A3P25940 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.4□□□□□ -2.18
COL5A3P25940 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.4□□□□□ -2.18
COL5A3P25940 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC1.4□□□□□ -2.18
COL5A3P25940 MIR5000-201ENST00000577717 103 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AL353778.1-201ENST00000603149 408 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 Z99289.3-201ENST00000605586 594 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AC009268.2-201ENST00000621925 457 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AC078883.4-201ENST00000623218 367 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AC079248.2-201ENST00000623779 326 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AC112204.3-201ENST00000623822 332 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AC006927.3-201ENST00000638789 384 ntBASIC1.4□□□□□ -2.18
COL5A3P25940 AC092447.10-201ENST00000620607 1652 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 AC008669.1-201ENST00000565823 2178 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 RNU5A-1-201ENST00000362698 116 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 RNA5SP257-201ENST00000363023 116 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 RNU6-433P-201ENST00000363216 104 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 RNU6-97P-201ENST00000363387 104 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 RNU4-38P-201ENST00000364472 129 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC1.4□□□□□ -2.19
COL5A3P25940 MTND2P18-201ENST00000419962 1030 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 DNAJA1P2-201ENST00000421360 1197 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 PGBD4P6-201ENST00000421501 610 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.4□□□□□ -2.19
COL5A3P25940 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.4□□□□□ -2.19
COL5A3P25940 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.4□□□□□ -2.19
COL5A3P25940 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC1.4□□□□□ -2.19
COL5A3P25940 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC1.4□□□□□ -2.19
COL5A3P25940 RNU6-113P-201ENST00000516653 101 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
COL5A3P25940 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC1.4□□□□□ -2.19
COL5A3P25940 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC1.4□□□□□ -2.19
COL5A3P25940 AC091489.2-201ENST00000566263 604 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 AC145350.1-201ENST00000567426 208 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.4□□□□□ -2.19
COL5A3P25940 AC060771.1-201ENST00000582031 164 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 BNIP3P23-201ENST00000599655 511 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 Z94722.1-201ENST00000604328 474 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 AC091932.3-201ENST00000624223 323 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 AC097520.1-201ENST00000624435 385 ntBASIC1.4□□□□□ -2.19
COL5A3P25940 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
COL5A3P25940 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
COL5A3P25940 RNU6-223P-201ENST00000362830 107 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 Y_RNA.169-201ENST00000363745 96 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 MIR513A1-201ENST00000385138 129 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 MTCYBP36-201ENST00000404146 440 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 SNRPEP10-201ENST00000420249 274 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC1.39□□□□□ -2.19
COL5A3P25940 TAAR7P-201ENST00000436141 242 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 LARP1BP3-201ENST00000437229 869 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.39□□□□□ -2.19
COL5A3P25940 AP1S2P1-201ENST00000457344 379 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC1.39□□□□□ -2.19
COL5A3P25940 AC116347.2-201ENST00000514912 523 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.39□□□□□ -2.19
COL5A3P25940 AC124947.2-202ENST00000552735 133 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 MIR3609-201ENST00000582661 80 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 MIR4658-201ENST00000584344 65 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 AP001981.2-201ENST00000603241 418 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 AC096720.1-201ENST00000604441 183 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 AC090186.1-201ENST00000605991 572 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 AC005332.10-201ENST00000612725 619 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 AP001486.3-201ENST00000615334 372 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 AC098657.3-201ENST00000620434 263 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC1.39□□□□□ -2.19
COL5A3P25940 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC1.39□□□□□ -2.19
COL5A3P25940 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.39□□□□□ -2.19
COL5A3P25940 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC1.39□□□□□ -2.19
COL5A3P25940 AL049641.1-201ENST00000441055 1948 ntBASIC1.39□□□□□ -2.19
COL5A3P25940 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
COL5A3P25940 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
COL5A3P25940 RNU6-217P-201ENST00000384164 104 ntBASIC1.38□□□□□ -2.19
COL5A3P25940 RNU6-997P-201ENST00000384725 107 ntBASIC1.38□□□□□ -2.19
COL5A3P25940 U3.20-201ENST00000390909 217 ntBASIC1.38□□□□□ -2.19
COL5A3P25940 AL031577.2-201ENST00000404133 280 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms