Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MIR219B-201ENST00000637023 88 ntBASIC2.18□□□□□ -2.06
HOXC4P09017 AL137003.2-201ENST00000606924 2538 ntBASIC2.18□□□□□ -2.06
HOXC4P09017 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXC4P09017 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXC4P09017 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXC4P09017 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.17□□□□□ -2.06
HOXC4P09017 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXC4P09017 Y_RNA.22-201ENST00000362492 102 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 Y_RNA.38-201ENST00000362617 102 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 RNU6-223P-201ENST00000362830 107 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
HOXC4P09017 RNU1-39P-201ENST00000383897 165 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 RNU6-74P-201ENST00000384235 107 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 RNU6-140P-201ENST00000384566 108 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 RNU6-754P-201ENST00000391166 107 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXC4P09017 MIR1277-201ENST00000408536 78 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 MIR1261-201ENST00000408659 82 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 RNU2-36P-201ENST00000410361 191 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 RNU6-516P-201ENST00000411381 104 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 AL513331.1-201ENST00000411908 397 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HOXC4P09017 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXC4P09017 MTATP6P18-201ENST00000417994 673 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXC4P09017 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HOXC4P09017 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXC4P09017 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXC4P09017 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXC4P09017 AC093106.2-201ENST00000428212 385 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 HMGB1P31-201ENST00000437242 427 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 AL445687.1-201ENST00000439946 251 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXC4P09017 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXC4P09017 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXC4P09017 MTATP6P30-201ENST00000443540 664 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXC4P09017 FDX1P2-201ENST00000450769 375 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXC4P09017 snoU13.15-201ENST00000459407 104 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 RPS15AP36-201ENST00000492022 382 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 AC010493.1-201ENST00000513479 292 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 SNORA31.18-201ENST00000517043 134 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXC4P09017 AC025678.1-201ENST00000567861 338 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 HMGN2P15-201ENST00000585707 270 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 AC002545.1-201ENST00000592511 181 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 AC012507.3-201ENST00000603556 477 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 AL121992.2-201ENST00000606262 256 ntBASIC2.17□□□□□ -2.06
HOXC4P09017 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXC4P09017 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXC4P09017 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.17□□□□□ -2.06
HOXC4P09017 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.16□□□□□ -2.06
HOXC4P09017 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
HOXC4P09017 Y_RNA.88-201ENST00000363029 99 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 Y_RNA.89-201ENST00000363031 102 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 SNORD56.2-201ENST00000363242 71 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 RNU6-511P-201ENST00000363496 107 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 RNU6-1085P-201ENST00000363576 107 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 RNU6-534P-201ENST00000364877 106 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.16□□□□□ -2.06
HOXC4P09017 Y_RNA.402-201ENST00000383972 102 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 RNU6-1158P-201ENST00000391167 107 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 MIR888-201ENST00000401186 77 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 AC022028.1-201ENST00000412054 408 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 RPL30P16-201ENST00000419341 429 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 AL451054.2-201ENST00000420896 202 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 AC000111.3-201ENST00000433478 193 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 AL606489.2-201ENST00000433886 234 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 RPL7P54-201ENST00000438336 674 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXC4P09017 AC005094.1-201ENST00000440420 368 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 DPPA3P1-201ENST00000448050 469 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 MTCO2P29-201ENST00000465212 189 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 MRPS17P3-201ENST00000465453 385 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.16□□□□□ -2.06
HOXC4P09017 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.16□□□□□ -2.06
HOXC4P09017 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXC4P09017 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXC4P09017 RNA5SP471-201ENST00000516971 106 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 MTND1P35-201ENST00000526739 508 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 AC104383.1-201ENST00000530297 370 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXC4P09017 AP001330.5-201ENST00000607176 411 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 AC104458.1-201ENST00000608243 463 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.16□□□□□ -2.06
HOXC4P09017 AC093788.1-201ENST00000609356 927 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 FTX_3.1-201ENST00000610451 147 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.16□□□□□ -2.06
HOXC4P09017 MIR6840-201ENST00000611937 71 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 AC009161.2-201ENST00000624626 138 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 AP006437.1-201ENST00000641440 3685 ntBASIC2.16□□□□□ -2.06
HOXC4P09017 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.16□□□□□ -2.06
HOXC4P09017 ZNF680P1-201ENST00000436625 1469 ntBASIC2.15□□□□□ -2.06
HOXC4P09017 RNU6-188P-201ENST00000364207 107 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 RNY1P12-201ENST00000364251 105 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 Y_RNA.295-201ENST00000364918 102 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 RNU6-867P-201ENST00000364956 107 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 SNORA6-201ENST00000384033 151 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 134.1 ms