Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 DISC2.1-201ENST00000612827 205 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 AC243829.7-201ENST00000633081 225 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 AC110079.1-202ENST00000635213 138 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 MTND1P37-201ENST00000636562 264 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 AC092593.1-201ENST00000515413 1815 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.46□□□□□ -2.02
HOXD4P09016 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
HOXD4P09016 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.45□□□□□ -2.02
HOXD4P09016 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
HOXD4P09016 MIR6073-201ENST00000352083 89 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 RNA5SP393-201ENST00000363423 117 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 U3.12-201ENST00000364498 214 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 RNY3P14-201ENST00000384309 102 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 Y_RNA.534-201ENST00000384599 112 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 RNU2-33P-201ENST00000410344 192 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 RNU6-193P-201ENST00000410977 107 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 AL592148.1-201ENST00000413568 445 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXD4P09016 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXD4P09016 AL365496.1-201ENST00000426885 215 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXD4P09016 AL714022.1-201ENST00000439897 151 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 CALM1P1-201ENST00000442082 433 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXD4P09016 SNRPFP3-201ENST00000457792 225 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 RNU7-23P-201ENST00000459465 62 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 RPL39P36-201ENST00000490784 156 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 SUMO2P6-201ENST00000505273 288 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXD4P09016 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.45□□□□□ -2.02
HOXD4P09016 RAC1P5-201ENST00000512182 576 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXD4P09016 SNORA31.11-201ENST00000516528 139 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 RNU6-928P-201ENST00000516876 104 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 SNORD60.2-201ENST00000516883 86 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXD4P09016 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXD4P09016 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXD4P09016 ATP5F1P5-201ENST00000526403 760 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXD4P09016 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXD4P09016 AC060780.3-201ENST00000589464 80 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 MIR15A-201ENST00000607334 83 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 AL590808.1-201ENST00000618696 141 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 uc_338.11-201ENST00000619132 160 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.45□□□□□ -2.02
HOXD4P09016 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 AC099654.14-201ENST00000638599 341 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 OR4G1P-203ENST00000641984 1631 ntBASIC2.45□□□□□ -2.02
HOXD4P09016 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.45□□□□□ -2.02
HOXD4P09016 AC138915.1-201ENST00000565427 1685 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.44□□□□□ -2.02
HOXD4P09016 Y_RNA.88-201ENST00000363029 99 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 RNU1-105P-201ENST00000363470 161 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 Y_RNA.303-201ENST00000364998 94 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 MIR514A2-201ENST00000385131 88 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 MIR514A3-201ENST00000385132 88 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
HOXD4P09016 FO393413.1-201ENST00000402892 195 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 FGF7P8-201ENST00000402994 292 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 AL606923.1-201ENST00000406616 190 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 RNA5SP181-201ENST00000410246 98 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 RNU4-46P-201ENST00000410818 138 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 RNA5SP111-201ENST00000411386 101 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.44□□□□□ -2.02
HOXD4P09016 AC080125.1-201ENST00000414888 684 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 AL160275.3-201ENST00000423876 471 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 CALM2P2-201ENST00000428512 440 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 MYL8P-204ENST00000431574 518 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 RPL36AP53-201ENST00000432891 316 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 AL353572.1-201ENST00000442490 417 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 MTCO2P3-201ENST00000442543 421 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 AC104058.1-201ENST00000448028 297 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 MTCYBP18-201ENST00000501056 747 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 RPL38P4-201ENST00000502376 214 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.44□□□□□ -2.02
HOXD4P09016 SNORA9.3-201ENST00000516383 129 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 RNA5SP402-201ENST00000517148 110 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 MIR4424-201ENST00000585257 86 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 AC020895.1-201ENST00000595362 272 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 AC019159.1-201ENST00000605094 187 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.44□□□□□ -2.02
HOXD4P09016 DUXAP9-208ENST00000622815 614 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 CASC19-280ENST00000642102 1351 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 HSPA8P4-201ENST00000511877 1920 ntBASIC2.44□□□□□ -2.02
HOXD4P09016 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.43□□□□□ -2.02
HOXD4P09016 RNA5SP68-201ENST00000363885 119 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 RNU1-112P-201ENST00000364401 164 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
HOXD4P09016 RNU6-217P-201ENST00000384164 104 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 MIR181A2-201ENST00000384863 110 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 RNU6-876P-201ENST00000391295 104 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 AL139039.1-201ENST00000401900 692 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 AL356776.1-201ENST00000406574 447 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.43□□□□□ -2.02
HOXD4P09016 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
HOXD4P09016 EEF1A1P40-201ENST00000412883 573 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms