Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.01□□□□□ -2.25
SDCBPO00560 AC138393.1-203ENST00000327086 343 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 Y_RNA.40-201ENST00000362645 93 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 RNU6-944P-201ENST00000364023 107 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC1.01□□□□□ -2.25
SDCBPO00560 MIR29C-201ENST00000385231 88 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
SDCBPO00560 MIR320C1-201ENST00000408566 88 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 MIR1285-1-201ENST00000408593 84 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 RN7SKP266-201ENST00000410232 287 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 RNU2-32P-201ENST00000411193 191 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 AC108667.1-201ENST00000428618 249 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 MTND4P25-201ENST00000441039 533 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 AL078601.1-201ENST00000444542 271 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.01□□□□□ -2.25
SDCBPO00560 RNU7-95P-201ENST00000459222 64 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 AC005908.1-201ENST00000468701 347 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 MTND2P31-201ENST00000512602 616 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 SNORA19.3-201ENST00000516165 130 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 MTND1P36-201ENST00000522384 936 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 AC087441.2-201ENST00000529141 262 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC1.01□□□□□ -2.25
SDCBPO00560 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.01□□□□□ -2.25
SDCBPO00560 RPS3AP4-201ENST00000555161 764 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 MTCYBP33-201ENST00000575007 1130 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 MIR3660-201ENST00000584845 100 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 AC073410.2-201ENST00000603240 332 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 PRR13P7-201ENST00000605538 430 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.01□□□□□ -2.25
SDCBPO00560 MIR6715A-201ENST00000615929 79 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 AP000943.4-201ENST00000622912 357 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 AC099654.8-201ENST00000637757 681 ntBASIC1.01□□□□□ -2.25
SDCBPO00560 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
SDCBPO00560 TEX21P-201ENST00000447107 1476 ntBASIC1□□□□□ -2.25
SDCBPO00560 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
SDCBPO00560 SNORD114-19-201ENST00000363072 75 ntBASIC1□□□□□ -2.25
SDCBPO00560 RNU6-529P-201ENST00000363383 104 ntBASIC1□□□□□ -2.25
SDCBPO00560 SMIM11P1-201ENST00000369586 178 ntBASIC1□□□□□ -2.25
SDCBPO00560 RNU6-439P-201ENST00000384188 106 ntBASIC1□□□□□ -2.25
SDCBPO00560 SNORD14D-201ENST00000384390 87 ntBASIC1□□□□□ -2.25
SDCBPO00560 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1□□□□□ -2.25
SDCBPO00560 AC092809.3-201ENST00000415453 231 ntBASIC1□□□□□ -2.25
SDCBPO00560 RPL30P13-201ENST00000418873 348 ntBASIC1□□□□□ -2.25
SDCBPO00560 AL022400.1-201ENST00000423946 935 ntBASIC1□□□□□ -2.25
SDCBPO00560 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1□□□□□ -2.25
SDCBPO00560 MTCO2P20-201ENST00000437339 673 ntBASIC1□□□□□ -2.25
SDCBPO00560 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1□□□□□ -2.25
SDCBPO00560 RPL31P58-201ENST00000469001 379 ntBASIC1□□□□□ -2.25
SDCBPO00560 MED28P2-201ENST00000475771 317 ntBASIC1□□□□□ -2.25
SDCBPO00560 MTND1P3-201ENST00000484956 952 ntBASIC1□□□□□ -2.25
SDCBPO00560 RPL36AP21-201ENST00000490372 323 ntBASIC1□□□□□ -2.25
SDCBPO00560 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1□□□□□ -2.25
SDCBPO00560 PTP4A1P4-201ENST00000512479 322 ntBASIC1□□□□□ -2.25
SDCBPO00560 SNORA44.1-201ENST00000517031 108 ntBASIC1□□□□□ -2.25
SDCBPO00560 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1□□□□□ -2.25
SDCBPO00560 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1□□□□□ -2.25
SDCBPO00560 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC1□□□□□ -2.25
SDCBPO00560 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1□□□□□ -2.25
SDCBPO00560 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1□□□□□ -2.25
SDCBPO00560 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1□□□□□ -2.25
SDCBPO00560 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC1□□□□□ -2.25
SDCBPO00560 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1□□□□□ -2.25
SDCBPO00560 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1□□□□□ -2.25
SDCBPO00560 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC1□□□□□ -2.25
SDCBPO00560 AC010900.2-201ENST00000604508 210 ntBASIC1□□□□□ -2.25
SDCBPO00560 BCRP9-201ENST00000605312 388 ntBASIC1□□□□□ -2.25
SDCBPO00560 AL157834.3-201ENST00000615543 103 ntBASIC1□□□□□ -2.25
SDCBPO00560 AC006386.1-201ENST00000619436 415 ntBASIC1□□□□□ -2.25
SDCBPO00560 U1.36-201ENST00000620684 176 ntBASIC1□□□□□ -2.25
SDCBPO00560 AC091965.5-201ENST00000624785 342 ntBASIC1□□□□□ -2.25
SDCBPO00560 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1□□□□□ -2.25
SDCBPO00560 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1□□□□□ -2.25
SDCBPO00560 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC0.99□□□□□ -2.25
SDCBPO00560 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
SDCBPO00560 RNU6-942P-201ENST00000363002 107 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 Y_RNA.140-201ENST00000363474 103 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 RNU5A-8P-201ENST00000364102 114 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 RNU4-91P-201ENST00000364778 135 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 RNU6-817P-201ENST00000391083 104 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 BTF3L4P2-201ENST00000392798 346 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 RNU6-1025P-201ENST00000410629 104 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 VPS26BP1-201ENST00000417155 755 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC0.99□□□□□ -2.25
SDCBPO00560 LARP1BP3-201ENST00000437229 869 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC0.99□□□□□ -2.25
SDCBPO00560 RNU6-965P-201ENST00000516721 96 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 RNU6-1315P-201ENST00000517187 99 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC0.99□□□□□ -2.25
SDCBPO00560 LRRC6P1-201ENST00000532188 885 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.99□□□□□ -2.25
SDCBPO00560 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC0.99□□□□□ -2.25
SDCBPO00560 MIR4524B-201ENST00000581569 115 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 BNIP3P30-201ENST00000601184 574 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 AL606834.3-201ENST00000602615 496 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 AL596327.1-201ENST00000603629 213 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 AC073413.2-201ENST00000604332 360 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 AP001485.1-201ENST00000604799 199 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC0.99□□□□□ -2.25
SDCBPO00560 AC084824.5-201ENST00000612009 413 ntBASIC0.99□□□□□ -2.25
SDCBPO00560 AC130324.3-201ENST00000614165 542 ntBASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms