Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RPL7P20-201ENST00000520308 745 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AL121821.2-201ENST00000556081 394 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AL391813.1-201ENST00000603098 260 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AL645944.1-201ENST00000603857 493 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AC008536.2-201ENST00000607284 349 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 OR5AK4P-201ENST00000635912 903 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 CDC27P3-201ENST00000635418 1910 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 OR4G2P-201ENST00000328113 903 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 MIR449A-201ENST00000362113 91 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 RNU6-898P-201ENST00000365627 104 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 Y_RNA.517-201ENST00000384551 106 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 MTCO3P30-201ENST00000426425 670 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AC104389.3-201ENST00000445629 235 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AL513328.1-201ENST00000446460 224 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AC092001.1-201ENST00000453012 261 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 RPL9P6-201ENST00000492764 598 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 MTCO3P9-201ENST00000506989 781 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 RNU6-581P-201ENST00000516214 105 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AP005435.4-201ENST00000529514 284 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 ELOCP31-201ENST00000540463 467 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AC004486.1-201ENST00000546846 233 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AL138889.2-201ENST00000603883 242 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AC005609.4-201ENST00000625071 447 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 AC007336.1-201ENST00000576365 3828 ntBASIC2.7□□□□□ -1.98
CPSF3Q9UKF6 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 MIR412-201ENST00000362142 91 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 SNORD14B-201ENST00000364533 90 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 RNU6-1179P-201ENST00000384667 107 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AL591416.1-201ENST00000404015 867 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 Y_RNA.623-201ENST00000411128 95 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 RPL21P90-201ENST00000415692 466 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AL161651.1-201ENST00000440882 223 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 MTND1P18-201ENST00000448191 573 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 TPTE2P5-203ENST00000458118 728 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AC133134.1-201ENST00000466800 359 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AC107401.1-201ENST00000503426 685 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 RN7SKP219-201ENST00000516825 296 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AP000889.1-201ENST00000530968 660 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 LINC00933-203ENST00000559812 219 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AC025678.1-201ENST00000567861 338 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 MTATP6P3-201ENST00000581686 676 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AC004223.2-201ENST00000590309 544 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AC073539.2-201ENST00000597113 165 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AC007621.1-201ENST00000604544 437 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AC008945.2-201ENST00000606056 604 ntBASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.69□□□□□ -1.98
CPSF3Q9UKF6 AC004520.1-201ENST00000608362 1413 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 AL139276.1-201ENST00000311910 1001 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 RNU6-1158P-201ENST00000391167 107 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 AL359511.1-201ENST00000402970 211 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 AC016831.2-201ENST00000417179 352 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 RNU1-86P-201ENST00000516108 154 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 RNU1-107P-201ENST00000516617 154 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 AC023824.2-201ENST00000566185 400 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 MIR3670-2-201ENST00000582974 65 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 MIR3670-1-201ENST00000584160 65 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 MIR3670-3-201ENST00000584855 65 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 AC091152.3-201ENST00000604227 325 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 AC017083.3-201ENST00000609955 700 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 MIR3670-4-201ENST00000612260 65 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 208.8 ms