Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.1□□□□□ -1.91
USP44Q9H0E7 AL512360.1-201ENST00000555346 234 ntBASIC3.1□□□□□ -1.91
USP44Q9H0E7 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.1□□□□□ -1.91
USP44Q9H0E7 AC007151.1-201ENST00000572774 483 ntBASIC3.1□□□□□ -1.91
USP44Q9H0E7 AC008752.3-201ENST00000588113 712 ntBASIC3.1□□□□□ -1.91
USP44Q9H0E7 AC092794.1-201ENST00000612734 582 ntBASIC3.1□□□□□ -1.91
USP44Q9H0E7 AC090517.2-201ENST00000614966 680 ntBASIC3.1□□□□□ -1.91
USP44Q9H0E7 MIR6134-201ENST00000617606 109 ntBASIC3.1□□□□□ -1.91
USP44Q9H0E7 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
USP44Q9H0E7 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
USP44Q9H0E7 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP44Q9H0E7 AC093536.2-201ENST00000565257 1406 ntBASIC3.1□□□□□ -1.91
USP44Q9H0E7 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.1□□□□□ -1.91
USP44Q9H0E7 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP44Q9H0E7 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.09□□□□□ -1.91
USP44Q9H0E7 Y_RNA.255-201ENST00000364581 97 ntBASIC3.09□□□□□ -1.91
USP44Q9H0E7 RNU6-116P-201ENST00000384042 109 ntBASIC3.09□□□□□ -1.91
USP44Q9H0E7 AL356057.2-201ENST00000403318 432 ntBASIC3.09□□□□□ -1.91
USP44Q9H0E7 Y_RNA.623-201ENST00000411128 95 ntBASIC3.09□□□□□ -1.91
USP44Q9H0E7 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.09□□□□□ -1.91
USP44Q9H0E7 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.09□□□□□ -1.91
USP44Q9H0E7 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.09□□□□□ -1.91
USP44Q9H0E7 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC3.09□□□□□ -1.91
USP44Q9H0E7 RPS15AP27-201ENST00000449183 343 ntBASIC3.09□□□□□ -1.91
USP44Q9H0E7 AL162395.1-201ENST00000457882 422 ntBASIC3.09□□□□□ -1.91
USP44Q9H0E7 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.09□□□□□ -1.91
USP44Q9H0E7 SEM1P1-201ENST00000506694 209 ntBASIC3.09□□□□□ -1.91
USP44Q9H0E7 Y_RNA.704-201ENST00000516851 102 ntBASIC3.09□□□□□ -1.91
USP44Q9H0E7 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.09□□□□□ -1.91
USP44Q9H0E7 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.09□□□□□ -1.91
USP44Q9H0E7 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.09□□□□□ -1.91
USP44Q9H0E7 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.09□□□□□ -1.91
USP44Q9H0E7 AC025165.5-201ENST00000602802 578 ntBASIC3.09□□□□□ -1.91
USP44Q9H0E7 AC007621.1-201ENST00000604544 437 ntBASIC3.09□□□□□ -1.91
USP44Q9H0E7 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.09□□□□□ -1.91
USP44Q9H0E7 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
USP44Q9H0E7 ADAM3A-203ENST00000461344 2157 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 AC006020.1-201ENST00000420179 1854 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 RNU6-166P-201ENST00000384371 107 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 AC023141.4-201ENST00000412031 328 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 EEF1A1P40-201ENST00000412883 573 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 AL353621.1-201ENST00000418219 243 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 EIF1P1-201ENST00000421436 341 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 USP9YP18-201ENST00000425912 695 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 AC007560.1-201ENST00000426912 237 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 GTF2IP20-201ENST00000431663 360 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 UBE2V1P8-201ENST00000437166 265 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 AC006026.2-201ENST00000457376 180 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 AC022493.1-201ENST00000492984 337 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 AC092436.1-201ENST00000506450 503 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 SNORA31.26-201ENST00000517250 137 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 MTND4LP26-201ENST00000518144 282 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 AL137161.1-201ENST00000532231 390 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 AL157687.1-201ENST00000554853 619 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 AC025678.1-201ENST00000567861 338 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 MTATP6P3-201ENST00000581686 676 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 AC093788.1-201ENST00000609356 927 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 CTSLP2-204ENST00000629029 392 ntBASIC3.08□□□□□ -1.92
USP44Q9H0E7 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
USP44Q9H0E7 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.08□□□□□ -1.92
USP44Q9H0E7 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
USP44Q9H0E7 CDC27P3-201ENST00000635418 1910 ntBASIC3.07□□□□□ -1.92
USP44Q9H0E7 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
USP44Q9H0E7 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
USP44Q9H0E7 RNA5SP289-201ENST00000362332 137 ntBASIC3.07□□□□□ -1.92
USP44Q9H0E7 RNU6-1090P-201ENST00000364065 94 ntBASIC3.07□□□□□ -1.92
USP44Q9H0E7 RNU4-12P-201ENST00000365233 139 ntBASIC3.07□□□□□ -1.92
USP44Q9H0E7 RNU6-483P-201ENST00000384088 108 ntBASIC3.07□□□□□ -1.92
USP44Q9H0E7 RNU6-434P-201ENST00000384376 107 ntBASIC3.07□□□□□ -1.92
USP44Q9H0E7 RNU6-903P-201ENST00000391270 109 ntBASIC3.07□□□□□ -1.92
USP44Q9H0E7 RAP1BP3-201ENST00000407180 549 ntBASIC3.07□□□□□ -1.92
USP44Q9H0E7 SNORA11.2-201ENST00000408318 127 ntBASIC3.07□□□□□ -1.92
USP44Q9H0E7 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.07□□□□□ -1.92
USP44Q9H0E7 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.07□□□□□ -1.92
USP44Q9H0E7 AC016691.1-201ENST00000441321 413 ntBASIC3.07□□□□□ -1.92
USP44Q9H0E7 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.07□□□□□ -1.92
USP44Q9H0E7 OSTCP8-201ENST00000445117 448 ntBASIC3.07□□□□□ -1.92
USP44Q9H0E7 AL118520.1-201ENST00000450770 291 ntBASIC3.07□□□□□ -1.92
USP44Q9H0E7 BTF3P15-201ENST00000455606 336 ntBASIC3.07□□□□□ -1.92
USP44Q9H0E7 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.07□□□□□ -1.92
USP44Q9H0E7 AL121769.1-201ENST00000469473 401 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms