Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RNU6-256P-201ENST00000516747 97 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
NUP88Q99567 AC022080.3-201ENST00000544433 482 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 SCOCP1-201ENST00000554676 349 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.67□□□□□ -1.82
NUP88Q99567 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.67□□□□□ -1.82
NUP88Q99567 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.67□□□□□ -1.82
NUP88Q99567 MIR3942-201ENST00000585264 109 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 AC008121.1-201ENST00000603244 268 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 APOOP1-201ENST00000604695 592 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 RNU6-6P-201ENST00000606623 107 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 AC009994.1-201ENST00000606889 253 ntBASIC3.67□□□□□ -1.82
NUP88Q99567 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
NUP88Q99567 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
NUP88Q99567 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
NUP88Q99567 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
NUP88Q99567 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
NUP88Q99567 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.66□□□□□ -1.82
NUP88Q99567 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.66□□□□□ -1.82
NUP88Q99567 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.66□□□□□ -1.82
NUP88Q99567 Y_RNA.142-201ENST00000363491 102 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 RNU6-214P-201ENST00000384130 107 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 SNORA44-201ENST00000384584 132 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 AL138885.1-201ENST00000405921 675 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.66□□□□□ -1.82
NUP88Q99567 VN1R36P-201ENST00000414936 291 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.66□□□□□ -1.82
NUP88Q99567 AC093151.1-201ENST00000427711 313 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC3.66□□□□□ -1.82
NUP88Q99567 AL031274.1-201ENST00000450334 232 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 RNU7-23P-201ENST00000459465 62 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.66□□□□□ -1.82
NUP88Q99567 AL049830.2-201ENST00000480072 201 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
NUP88Q99567 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.66□□□□□ -1.82
NUP88Q99567 RNU6-864P-201ENST00000516256 108 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 Y_RNA.687-201ENST00000516558 91 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 SNORD59.2-201ENST00000516873 68 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 SNORA31.21-201ENST00000517180 77 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 AC009812.2-201ENST00000517657 457 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
NUP88Q99567 AP000889.2-201ENST00000532684 490 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.66□□□□□ -1.82
NUP88Q99567 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.66□□□□□ -1.82
NUP88Q99567 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.66□□□□□ -1.82
NUP88Q99567 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.66□□□□□ -1.82
NUP88Q99567 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.66□□□□□ -1.82
NUP88Q99567 AL033523.1-201ENST00000605153 153 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 AC087045.1-201ENST00000605856 382 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.66□□□□□ -1.82
NUP88Q99567 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.66□□□□□ -1.82
NUP88Q99567 RMST_7.1-201ENST00000621935 268 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.66□□□□□ -1.82
NUP88Q99567 AL365361.1-201ENST00000566942 3481 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.66□□□□□ -1.82
NUP88Q99567 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
NUP88Q99567 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
NUP88Q99567 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.65□□□□□ -1.82
NUP88Q99567 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.65□□□□□ -1.82
NUP88Q99567 SNORD81.2-201ENST00000365153 76 ntBASIC3.65□□□□□ -1.83
NUP88Q99567 SNORD67-201ENST00000390833 111 ntBASIC3.65□□□□□ -1.83
NUP88Q99567 RNA5SP293-201ENST00000410527 113 ntBASIC3.65□□□□□ -1.83
NUP88Q99567 BPY2DP-201ENST00000422208 265 ntBASIC3.65□□□□□ -1.83
NUP88Q99567 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.65□□□□□ -1.83
NUP88Q99567 RPS15AP5-201ENST00000436276 388 ntBASIC3.65□□□□□ -1.83
NUP88Q99567 AL714022.1-201ENST00000439897 151 ntBASIC3.65□□□□□ -1.83
NUP88Q99567 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.65□□□□□ -1.83
NUP88Q99567 AC103851.1-201ENST00000506833 274 ntBASIC3.65□□□□□ -1.83
NUP88Q99567 AC114781.4-201ENST00000513707 639 ntBASIC3.65□□□□□ -1.83
NUP88Q99567 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.65□□□□□ -1.83
NUP88Q99567 MIR3186-201ENST00000577404 85 ntBASIC3.65□□□□□ -1.83
NUP88Q99567 AC020895.1-201ENST00000595362 272 ntBASIC3.65□□□□□ -1.83
NUP88Q99567 AC123912.5-201ENST00000605470 343 ntBASIC3.65□□□□□ -1.83
NUP88Q99567 AL022345.1-201ENST00000607292 135 ntBASIC3.65□□□□□ -1.83
NUP88Q99567 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.65□□□□□ -1.83
NUP88Q99567 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.65□□□□□ -1.83
NUP88Q99567 AC073476.4-201ENST00000628409 72 ntBASIC3.65□□□□□ -1.83
NUP88Q99567 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.65□□□□□ -1.83
NUP88Q99567 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
NUP88Q99567 RNU6-858P-201ENST00000362436 107 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 RNU6-1280P-201ENST00000365211 107 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 RNU5E-7P-201ENST00000365290 117 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 Y_RNA.356-201ENST00000365475 113 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 Z98749.2-208ENST00000381646 500 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 MIR634-201ENST00000385208 97 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
NUP88Q99567 RNU6-1106P-201ENST00000390845 107 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 U3.37-201ENST00000408528 213 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 PDCL2P1-201ENST00000419302 352 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
NUP88Q99567 RPL23AP22-201ENST00000437556 453 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 SNRPEP8-201ENST00000442866 260 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 MRPL50P4-201ENST00000446432 475 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.64□□□□□ -1.83
NUP88Q99567 AC092001.1-201ENST00000453012 261 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.64□□□□□ -1.83
NUP88Q99567 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.64□□□□□ -1.83
NUP88Q99567 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
NUP88Q99567 RPL7P43-201ENST00000478876 753 ntBASIC3.64□□□□□ -1.83
NUP88Q99567 AC026801.1-201ENST00000497178 464 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 174.3 ms