Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
USP53Q70EK8 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.9□□□□□ -1.79
USP53Q70EK8 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
USP53Q70EK8 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
USP53Q70EK8 RNA5SP119-201ENST00000362715 117 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 Y_RNA.193-201ENST00000363979 102 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 RNU6-270P-201ENST00000364131 105 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 SNORD14.1-201ENST00000365609 90 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 SET-203ENST00000372688 801 ntTSL 2 BASIC3.89□□□□□ -1.79
USP53Q70EK8 Y_RNA.401-201ENST00000383965 117 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 RNU6-213P-201ENST00000384051 104 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 MIR513A2-201ENST00000385249 127 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 RNU6-700P-201ENST00000391043 107 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 SNORA11.2-201ENST00000408318 127 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 AP000275.1-201ENST00000411943 390 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 RAB9AP3-201ENST00000412737 573 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 AC093578.1-201ENST00000415219 368 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 AC007098.1-201ENST00000420122 367 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.89□□□□□ -1.79
USP53Q70EK8 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.89□□□□□ -1.79
USP53Q70EK8 RAB9AP1-201ENST00000449393 573 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 RPL23AP14-201ENST00000468281 468 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.89□□□□□ -1.79
USP53Q70EK8 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.89□□□□□ -1.79
USP53Q70EK8 RNU6-635P-201ENST00000516651 102 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 RNU7-143P-201ENST00000516781 65 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 RNU6-928P-201ENST00000516876 104 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.89□□□□□ -1.79
USP53Q70EK8 AC144568.1-201ENST00000520139 137 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.89□□□□□ -1.79
USP53Q70EK8 AP002404.1-201ENST00000532005 451 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 AC107016.1-201ENST00000550463 337 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.89□□□□□ -1.79
USP53Q70EK8 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
USP53Q70EK8 AC006006.1-201ENST00000603082 144 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 7SK.7-201ENST00000603504 247 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 AC124312.5-201ENST00000604451 268 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 AL021879.1-201ENST00000611756 288 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 AL121772.2-201ENST00000614331 297 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
USP53Q70EK8 U4.1-201ENST00000620349 87 ntBASIC3.89□□□□□ -1.79
USP53Q70EK8 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP53Q70EK8 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.88□□□□□ -1.79
USP53Q70EK8 MAPK10-253ENST00000641010 4072 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 AL133383.2-201ENST00000622958 2336 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 RNY3P11-201ENST00000364153 102 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 MIR30B-201ENST00000384850 88 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 MIR1252-201ENST00000408861 65 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 AC092423.1-201ENST00000430165 186 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.88□□□□□ -1.79
USP53Q70EK8 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.88□□□□□ -1.79
USP53Q70EK8 AL731563.1-201ENST00000442202 214 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 RPS3AP46-201ENST00000448352 682 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.88□□□□□ -1.79
USP53Q70EK8 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.88□□□□□ -1.79
USP53Q70EK8 RNA5SP310-201ENST00000459084 116 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.88□□□□□ -1.79
USP53Q70EK8 RPS27AP10-201ENST00000496103 208 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 MRPS35P2-201ENST00000508242 191 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.88□□□□□ -1.79
USP53Q70EK8 VN1R91P-201ENST00000594377 169 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 AC007179.3-201ENST00000604976 235 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 HMGB1P50-201ENST00000605814 607 ntBASIC3.88□□□□□ -1.79
USP53Q70EK8 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
USP53Q70EK8 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP53Q70EK8 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP53Q70EK8 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP53Q70EK8 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
USP53Q70EK8 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.87□□□□□ -1.79
USP53Q70EK8 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.87□□□□□ -1.79
USP53Q70EK8 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.87□□□□□ -1.79
USP53Q70EK8 AC032011.1-201ENST00000611703 1549 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
USP53Q70EK8 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
USP53Q70EK8 RNA5SP124-201ENST00000362739 110 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.87□□□□□ -1.79
USP53Q70EK8 AL591034.1-201ENST00000407447 340 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 MIR1183-201ENST00000408856 89 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 AC114482.1-201ENST00000418010 247 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.87□□□□□ -1.79
USP53Q70EK8 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
USP53Q70EK8 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.87□□□□□ -1.79
USP53Q70EK8 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.87□□□□□ -1.79
USP53Q70EK8 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.87□□□□□ -1.79
USP53Q70EK8 AC124916.1-201ENST00000444020 547 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.87□□□□□ -1.79
USP53Q70EK8 PPIAP15-201ENST00000479662 484 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 RNA5SP309-201ENST00000516670 106 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 RNA5SP179-201ENST00000517284 121 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 AC040926.1-201ENST00000530195 238 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.87□□□□□ -1.79
USP53Q70EK8 HIGD1AP1-201ENST00000550979 275 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 AL161670.1-201ENST00000554348 137 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 AC006600.1-201ENST00000572529 153 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.87□□□□□ -1.79
USP53Q70EK8 AC091167.4-201ENST00000605079 184 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.87□□□□□ -1.79
USP53Q70EK8 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.87□□□□□ -1.79
USP53Q70EK8 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.87□□□□□ -1.79
USP53Q70EK8 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 167 ms