Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SF3A1Q15459 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
SF3A1Q15459 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SF3A1Q15459 Y_RNA.474-201ENST00000384341 102 ntBASIC4.15□□□□□ -1.75
SF3A1Q15459 AL133475.1-201ENST00000404414 305 ntBASIC4.15□□□□□ -1.75
SF3A1Q15459 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.15□□□□□ -1.75
SF3A1Q15459 Z82205.1-201ENST00000428456 297 ntBASIC4.15□□□□□ -1.75
SF3A1Q15459 AC116337.1-201ENST00000509680 687 ntBASIC4.15□□□□□ -1.75
SF3A1Q15459 RNU6-559P-201ENST00000516151 98 ntBASIC4.15□□□□□ -1.75
SF3A1Q15459 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.15□□□□□ -1.75
SF3A1Q15459 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC4.15□□□□□ -1.75
SF3A1Q15459 AL391813.1-201ENST00000603098 260 ntBASIC4.15□□□□□ -1.75
SF3A1Q15459 SRGNP1-201ENST00000603392 451 ntBASIC4.15□□□□□ -1.75
SF3A1Q15459 AC019159.1-201ENST00000605094 187 ntBASIC4.15□□□□□ -1.75
SF3A1Q15459 AC124303.1-201ENST00000605703 360 ntBASIC4.15□□□□□ -1.75
SF3A1Q15459 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.15□□□□□ -1.75
SF3A1Q15459 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
SF3A1Q15459 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SF3A1Q15459 MTND5P1-201ENST00000445440 1375 ntBASIC4.14□□□□□ -1.75
SF3A1Q15459 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SF3A1Q15459 RBBP8P1-201ENST00000449447 1844 ntBASIC4.14□□□□□ -1.75
SF3A1Q15459 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
SF3A1Q15459 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.14□□□□□ -1.75
SF3A1Q15459 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
SF3A1Q15459 Y_RNA.67-201ENST00000362870 100 ntBASIC4.14□□□□□ -1.75
SF3A1Q15459 RNU1-140P-201ENST00000365040 165 ntBASIC4.14□□□□□ -1.75
SF3A1Q15459 RNA5SP44-201ENST00000410446 133 ntBASIC4.14□□□□□ -1.75
SF3A1Q15459 AC074117.2-201ENST00000417130 397 ntBASIC4.14□□□□□ -1.75
SF3A1Q15459 FABP5P14-201ENST00000437273 393 ntBASIC4.14□□□□□ -1.75
SF3A1Q15459 RNU6-1016P-201ENST00000516689 94 ntBASIC4.14□□□□□ -1.75
SF3A1Q15459 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.14□□□□□ -1.75
SF3A1Q15459 IGHV3-76-201ENST00000522465 295 ntBASIC4.14□□□□□ -1.75
SF3A1Q15459 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC4.14□□□□□ -1.75
SF3A1Q15459 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.14□□□□□ -1.75
SF3A1Q15459 MIR5685-201ENST00000579080 79 ntBASIC4.14□□□□□ -1.75
SF3A1Q15459 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC4.14□□□□□ -1.75
SF3A1Q15459 AC008739.3-201ENST00000603262 127 ntBASIC4.14□□□□□ -1.75
SF3A1Q15459 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.14□□□□□ -1.75
SF3A1Q15459 AC024581.2-201ENST00000619986 252 ntBASIC4.14□□□□□ -1.75
SF3A1Q15459 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.14□□□□□ -1.75
SF3A1Q15459 AC032011.1-201ENST00000611703 1549 ntBASIC4.14□□□□□ -1.75
SF3A1Q15459 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SF3A1Q15459 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.14□□□□□ -1.75
SF3A1Q15459 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SF3A1Q15459 AC103988.1-201ENST00000566382 2177 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 Y_RNA.61-201ENST00000362835 102 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 SNORA70.4-201ENST00000365509 134 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
SF3A1Q15459 Y_RNA.387-201ENST00000383918 102 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SF3A1Q15459 RNU6-370P-201ENST00000411008 104 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 AC245054.2-201ENST00000415639 319 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 AL358075.3-201ENST00000426289 226 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 HMGN2P31-201ENST00000432430 273 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.13□□□□□ -1.75
SF3A1Q15459 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SF3A1Q15459 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.13□□□□□ -1.75
SF3A1Q15459 AC133134.1-201ENST00000466800 359 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.13□□□□□ -1.75
SF3A1Q15459 SMURF2P1-201ENST00000514992 481 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 RNU2-27P-201ENST00000516185 142 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 SNORA31.18-201ENST00000517043 134 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 IMMP1LP2-201ENST00000552954 492 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC4.13□□□□□ -1.75
SF3A1Q15459 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC4.13□□□□□ -1.75
SF3A1Q15459 C8orf59P2-201ENST00000603441 271 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 RNVU1-4-201ENST00000612985 164 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 AL359757.2-201ENST00000624309 274 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
SF3A1Q15459 AL021368.2-201ENST00000606125 5352 ntBASIC4.13□□□□□ -1.75
SF3A1Q15459 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SF3A1Q15459 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SF3A1Q15459 RNU6-843P-201ENST00000384454 104 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 U8.11-201ENST00000384699 133 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 U8.12-201ENST00000384701 133 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 MIR521-1-201ENST00000384902 87 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 SAR1AP2-201ENST00000392696 594 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 AL513475.1-201ENST00000406602 315 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 SNORA11.1-201ENST00000408133 129 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 RNU4-14P-201ENST00000410858 122 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.12□□□□□ -1.75
SF3A1Q15459 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.12□□□□□ -1.75
SF3A1Q15459 GOT2P5-201ENST00000433995 546 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.12□□□□□ -1.75
SF3A1Q15459 AC009296.1-201ENST00000443146 155 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 U8.18-201ENST00000459285 133 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.12□□□□□ -1.75
SF3A1Q15459 AC010265.1-201ENST00000513509 211 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 RNU6-612P-201ENST00000516909 102 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 AP006245.1-201ENST00000522549 120 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.12□□□□□ -1.75
SF3A1Q15459 MIR3944-201ENST00000581277 108 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.12□□□□□ -1.75
SF3A1Q15459 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.12□□□□□ -1.75
SF3A1Q15459 BNIP3P16-201ENST00000589779 534 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 AC008739.2-201ENST00000597006 317 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 MIR3976-201ENST00000606807 139 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 AC005046.1-201ENST00000608515 625 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 AL133215.3-201ENST00000609801 448 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms