Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC004492.1-201ENST00000607036 742 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 Z82243.1-201ENST00000609432 473 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 AL353770.2-201ENST00000620024 78 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 MIR8063-201ENST00000621930 81 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 FARSBP1-201ENST00000435808 1778 ntBASIC0.73□□□□□ -2.29
FOXA3P55318 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
FOXA3P55318 AL161781.1-201ENST00000354277 403 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 RNA5SP327-201ENST00000362494 101 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 RNU1-22P-201ENST00000363334 158 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 RNU6-529P-201ENST00000363383 104 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 RNU6-512P-201ENST00000364438 103 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC0.72□□□□□ -2.29
FOXA3P55318 MIR186-201ENST00000384988 86 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 BX664727.1-201ENST00000416024 466 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC0.72□□□□□ -2.29
FOXA3P55318 DPRXP1-201ENST00000426312 460 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 JTBP1-201ENST00000441314 247 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC0.72□□□□□ -2.29
FOXA3P55318 RPL23AP35-201ENST00000451906 501 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 AC026414.1-201ENST00000504046 698 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 RNA5SP404-201ENST00000517118 132 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC0.72□□□□□ -2.29
FOXA3P55318 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.72□□□□□ -2.29
FOXA3P55318 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.72□□□□□ -2.29
FOXA3P55318 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC0.72□□□□□ -2.29
FOXA3P55318 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC0.72□□□□□ -2.29
FOXA3P55318 AC012065.4-201ENST00000602445 679 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 AC026741.1-201ENST00000605892 482 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 AC005332.6-201ENST00000613178 446 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 AL157834.3-201ENST00000615543 103 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.72□□□□□ -2.29
FOXA3P55318 AP003485.1-201ENST00000625093 753 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 AC099063.3-201ENST00000642066 185 ntBASIC0.72□□□□□ -2.29
FOXA3P55318 AC107982.1-201ENST00000507171 1300 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 RNU4-38P-201ENST00000364472 129 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 MIR764-201ENST00000390811 85 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 SNORD65.1-201ENST00000390889 71 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 RNU6-952P-201ENST00000391164 108 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC0.71□□□□□ -2.3
FOXA3P55318 AC119751.3-201ENST00000399720 670 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC0.71□□□□□ -2.3
FOXA3P55318 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.71□□□□□ -2.3
FOXA3P55318 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC0.71□□□□□ -2.3
FOXA3P55318 MTND4P6-201ENST00000438297 472 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.71□□□□□ -2.3
FOXA3P55318 MTND2P20-201ENST00000440805 661 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
FOXA3P55318 RNU7-95P-201ENST00000459222 64 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 RPL30P1-201ENST00000488676 339 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 AC079140.2-201ENST00000506193 142 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC0.71□□□□□ -2.3
FOXA3P55318 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC0.71□□□□□ -2.3
FOXA3P55318 UTP23-205ENST00000520733 369 ntTSL 3 BASIC0.71□□□□□ -2.3
FOXA3P55318 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC0.71□□□□□ -2.3
FOXA3P55318 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC0.71□□□□□ -2.3
FOXA3P55318 AC136932.1-201ENST00000574771 208 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 AC012360.2-201ENST00000609349 391 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 AC090970.3-201ENST00000612566 866 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 AC008993.2-201ENST00000631744 806 ntBASIC0.71□□□□□ -2.3
FOXA3P55318 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
FOXA3P55318 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.7□□□□□ -2.3
FOXA3P55318 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.7□□□□□ -2.3
FOXA3P55318 RNU6-288P-201ENST00000363690 104 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 RNU4-51P-201ENST00000364206 140 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 RNU6-898P-201ENST00000365627 104 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
FOXA3P55318 AC138623.1-201ENST00000418060 216 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 BTF3P4-201ENST00000418852 495 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 AC104651.1-201ENST00000427559 735 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC0.7□□□□□ -2.3
FOXA3P55318 UBE2V1P8-201ENST00000437166 265 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 PRPS1P1-201ENST00000445305 876 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 SEPT14P24-201ENST00000447236 180 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 BTF3P15-201ENST00000455606 336 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC0.7□□□□□ -2.3
FOXA3P55318 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
FOXA3P55318 RPL26P26-201ENST00000480251 434 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 HMGN1P13-201ENST00000505795 138 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC0.7□□□□□ -2.3
FOXA3P55318 RNU6-751P-201ENST00000516382 101 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.7□□□□□ -2.3
FOXA3P55318 AC093012.1-202ENST00000549403 582 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC0.7□□□□□ -2.3
FOXA3P55318 AC009977.1-201ENST00000586015 570 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC0.7□□□□□ -2.3
FOXA3P55318 AC013244.2-201ENST00000603396 103 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 AL445435.1-201ENST00000604232 665 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 AP000860.1-201ENST00000605250 559 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 AL391813.2-201ENST00000609113 322 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 AC093788.1-201ENST00000609356 927 ntBASIC0.7□□□□□ -2.3
FOXA3P55318 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
FOXA3P55318 RNU6-707P-201ENST00000364647 95 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 RNU6-26P-201ENST00000383985 107 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 RNU6-160P-201ENST00000384591 107 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 SNORA11.2-201ENST00000408318 127 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 EIF1P1-201ENST00000421436 341 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC0.69□□□□□ -2.3
FOXA3P55318 RPS6P15-201ENST00000431996 751 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms