Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.17□□□□□ -2.06
COL4A4P53420 RNU6-1120P-201ENST00000362988 108 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 Y_RNA.146-201ENST00000363549 102 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 RNU6-359P-201ENST00000365466 108 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 Y_RNA.387-201ENST00000383918 102 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 RNU6-533P-201ENST00000384144 107 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 RNU6-74P-201ENST00000384235 107 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 U8.10-201ENST00000384260 133 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 MIR9-3-201ENST00000385084 90 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 MIR613-201ENST00000385248 95 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 RNU6-272P-201ENST00000411028 104 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 RNU6-603P-201ENST00000411403 107 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 MTND3P8-201ENST00000412909 339 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.17□□□□□ -2.06
COL4A4P53420 MTATP6P18-201ENST00000417994 673 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 POLR2J4-204ENST00000418424 324 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 BEND7P1-201ENST00000422058 457 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 AC104332.2-201ENST00000429959 156 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 AC022022.1-201ENST00000430304 178 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.17□□□□□ -2.06
COL4A4P53420 IPO7P1-201ENST00000442031 636 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 USP9YP15-201ENST00000442391 422 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.17□□□□□ -2.06
COL4A4P53420 IFNWP4-201ENST00000453148 294 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 RNU6-420P-201ENST00000458780 107 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 Y_RNA.632-201ENST00000459189 102 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 RNU7-27P-201ENST00000459281 62 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 AC010301.1-201ENST00000473936 355 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.17□□□□□ -2.06
COL4A4P53420 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.17□□□□□ -2.06
COL4A4P53420 AC114797.1-201ENST00000514003 728 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC2.17□□□□□ -2.06
COL4A4P53420 AC104986.1-201ENST00000517978 436 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.17□□□□□ -2.06
COL4A4P53420 AC013828.2-201ENST00000532487 235 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.17□□□□□ -2.06
COL4A4P53420 CYCSP2-201ENST00000558168 301 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.17□□□□□ -2.06
COL4A4P53420 AL355472.4-201ENST00000610233 626 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.17□□□□□ -2.06
COL4A4P53420 AL132822.1-201ENST00000617063 513 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 AC009248.2-201ENST00000619826 254 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 7SK.10-201ENST00000621414 298 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 AC002064.3-201ENST00000623448 346 ntBASIC2.17□□□□□ -2.06
COL4A4P53420 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.17□□□□□ -2.06
COL4A4P53420 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.17□□□□□ -2.06
COL4A4P53420 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
COL4A4P53420 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.17□□□□□ -2.06
COL4A4P53420 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
COL4A4P53420 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
COL4A4P53420 RNU6-451P-201ENST00000362921 107 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 SNORD114-26-201ENST00000363543 72 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 RNU6-777P-201ENST00000364265 104 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 SNORA33.2-201ENST00000365413 134 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 SNORA4.3-201ENST00000365564 137 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 SNORA69-201ENST00000383895 132 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 RNU6-809P-201ENST00000384461 107 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 RNU6-331P-201ENST00000384724 107 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
COL4A4P53420 RNU6-952P-201ENST00000391164 108 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 AL121972.1-201ENST00000402023 252 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 RNU4-62P-201ENST00000410125 130 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 RNA5SP338-201ENST00000410495 85 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 AC078974.1-201ENST00000411597 223 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 TPMTP2-201ENST00000414372 726 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 AC234782.4-201ENST00000417646 1048 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 OR51AB1P-201ENST00000429046 620 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 BNIP3P2-201ENST00000441221 577 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.16□□□□□ -2.06
COL4A4P53420 C1DP4-201ENST00000455429 424 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 RPL7P5-201ENST00000471472 736 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 AC083798.1-201ENST00000472671 131 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.16□□□□□ -2.06
COL4A4P53420 AC112206.3-201ENST00000514578 389 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 Y_RNA.718-201ENST00000517110 102 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 RN7SKP256-201ENST00000517201 314 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.16□□□□□ -2.06
COL4A4P53420 AC090572.1-201ENST00000519251 160 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.16□□□□□ -2.06
COL4A4P53420 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.16□□□□□ -2.06
COL4A4P53420 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.16□□□□□ -2.06
COL4A4P53420 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.16□□□□□ -2.06
COL4A4P53420 AC093027.1-201ENST00000546698 429 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 MIR3118-1-201ENST00000581787 76 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 AC007687.1-201ENST00000602704 304 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 AL359999.1-201ENST00000604513 294 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 AC004853.1-201ENST00000604902 698 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC2.16□□□□□ -2.06
COL4A4P53420 AC021646.1-201ENST00000605469 484 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 AC124303.1-201ENST00000605703 360 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 MIR98-201ENST00000606724 119 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.16□□□□□ -2.06
COL4A4P53420 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC2.16□□□□□ -2.06
COL4A4P53420 AC138649.5-201ENST00000637456 137 ntBASIC2.16□□□□□ -2.06
COL4A4P53420 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.16□□□□□ -2.06
COL4A4P53420 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.16□□□□□ -2.06
COL4A4P53420 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.15□□□□□ -2.06
COL4A4P53420 Y_RNA.315-201ENST00000365117 102 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 RNU6-456P-201ENST00000384493 107 ntBASIC2.15□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms